View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12910_low_3 (Length: 519)
Name: NF12910_low_3
Description: NF12910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12910_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 16 - 512
Target Start/End: Complemental strand, 36685165 - 36684668
Alignment:
| Q |
16 |
caaaatggggtatcaaacctcaatacggtttctaaatccgataagagagtttgtgaaaagatcacaaccttgaagatagtccaaacttggcaacnnnnnn |
115 |
Q |
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||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36685165 |
caaaatggggtatcaaacctcaatacggtttctaagttcgacaagagagtttgtgaaaagatcacaaccttgaagatagtccaaacttggcaacaaaaag |
36685066 |
T |
|
| Q |
116 |
nnnnnnntcgcggagcagttgccctctaaactatcactctaatttttatttgtaatcggactttt-caatataattagtctttaaactatttttaattca |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36685065 |
aaaaaaatcgcggagcagttgccctctaaactatcactctaatttttatttgcaatcggactttttcaatataattagtctttaaactatttttaattca |
36684966 |
T |
|
| Q |
215 |
ttagtatagtttcagaactatcattttctcttctatatttaaagcagcaaagggactaacttaatgagccgtgatggtttagatcgatattaaaagaaga |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36684965 |
ttagtatagtttcagaactatcattttctcttctatatttaaagcagcaaagggactaacttaatgagccgtgatagtttagatcgatattaaaagaaga |
36684866 |
T |
|
| Q |
315 |
tttaaaaaagtctataaaacacaaattaaattctctacatttggctttacgatgcagaagaccccgttagattatagaggatctctcataatcttaaaaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36684865 |
tttaaaaaagtctataaaacacaaattaaattctctacatttggctttacgatgcagaagaccccgttagattatagaggatctctcataatcttaaaaa |
36684766 |
T |
|
| Q |
415 |
atttctctcttaatcgaacagtccaaagccatctagcttcccaatgaaattgtggtaaaggatttgggttgtataaaaaagtgttacccttcatctca |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36684765 |
ttttctctcttaatcgaacagtccaaagccatctagcttcccaatgaaattgtggtaaaggatttgggttgtataaaaaagtgttacccttcatctca |
36684668 |
T |
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