View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12910_low_4 (Length: 513)

Name: NF12910_low_4
Description: NF12910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12910_low_4
NF12910_low_4
[»] chr4 (12 HSPs)
chr4 (83-466)||(33916130-33916513)
chr4 (12-66)||(33916033-33916087)
chr4 (98-198)||(47550360-47550460)
chr4 (99-198)||(42907875-42907974)
chr4 (117-195)||(14605935-14606013)
chr4 (90-195)||(11028053-11028158)
chr4 (99-180)||(33516097-33516178)
chr4 (98-195)||(48459469-48459566)
chr4 (114-154)||(35304567-35304607)
chr4 (99-185)||(12075651-12075737)
chr4 (119-195)||(29527821-29527897)
chr4 (119-195)||(31782622-31782698)
[»] chr2 (14 HSPs)
chr2 (98-198)||(45256806-45256906)
chr2 (98-195)||(37999466-37999563)
chr2 (99-186)||(30696908-30696995)
chr2 (119-199)||(43371557-43371637)
chr2 (100-195)||(24414141-24414236)
chr2 (98-198)||(13705367-13705467)
chr2 (119-199)||(38342524-38342604)
chr2 (99-195)||(44746118-44746214)
chr2 (98-198)||(45115541-45115641)
chr2 (32-66)||(13531869-13531903)
chr2 (89-195)||(15546718-15546824)
chr2 (85-199)||(17845396-17845510)
chr2 (98-182)||(8915959-8916043)
chr2 (99-194)||(34544320-34544416)
[»] chr1 (14 HSPs)
chr1 (98-195)||(45866194-45866291)
chr1 (83-204)||(47644860-47644979)
chr1 (108-195)||(44615484-44615571)
chr1 (108-195)||(44792998-44793085)
chr1 (98-195)||(17134930-17135027)
chr1 (100-198)||(28297919-28298017)
chr1 (101-195)||(36187229-36187323)
chr1 (100-198)||(49250779-49250877)
chr1 (98-195)||(18354089-18354186)
chr1 (98-195)||(29936399-29936496)
chr1 (141-198)||(34060031-34060088)
chr1 (98-151)||(42439723-42439776)
chr1 (98-195)||(51421841-51421938)
chr1 (119-199)||(35069894-35069974)
[»] chr6 (18 HSPs)
chr6 (99-199)||(256497-256597)
chr6 (101-195)||(18908878-18908972)
chr6 (98-195)||(27738754-27738851)
chr6 (100-195)||(32053072-32053167)
chr6 (98-195)||(2367308-2367405)
chr6 (117-194)||(29199895-29199972)
chr6 (98-195)||(32532522-32532619)
chr6 (98-195)||(32853826-32853923)
chr6 (119-207)||(14410852-14410940)
chr6 (98-194)||(24225680-24225776)
chr6 (98-192)||(12309554-12309648)
chr6 (101-195)||(15498309-15498403)
chr6 (88-194)||(20349037-20349142)
chr6 (113-194)||(7393897-7393978)
chr6 (98-151)||(10188126-10188179)
chr6 (87-184)||(10925463-10925559)
chr6 (98-195)||(12141367-12141464)
chr6 (130-195)||(34178338-34178403)
[»] chr5 (8 HSPs)
chr5 (98-198)||(29245958-29246058)
chr5 (98-185)||(12834594-12834681)
chr5 (98-195)||(4583101-4583198)
chr5 (98-198)||(5908695-5908795)
chr5 (136-199)||(16311299-16311362)
chr5 (98-195)||(4920808-4920905)
chr5 (157-194)||(27302746-27302783)
chr5 (98-198)||(12866558-12866658)
[»] chr7 (15 HSPs)
chr7 (100-195)||(12980366-12980461)
chr7 (98-195)||(3226955-3227052)
chr7 (101-195)||(7779998-7780092)
chr7 (98-195)||(25979926-25980023)
chr7 (98-194)||(16811717-16811812)
chr7 (98-204)||(5565307-5565413)
chr7 (117-195)||(26622957-26623035)
chr7 (98-195)||(16866156-16866253)
chr7 (98-195)||(41103643-41103740)
chr7 (98-195)||(43507432-43507529)
chr7 (142-199)||(43550422-43550479)
chr7 (90-195)||(45380086-45380191)
chr7 (119-199)||(27063146-27063226)
chr7 (98-198)||(30650618-30650718)
chr7 (98-198)||(45885771-45885871)
[»] chr8 (9 HSPs)
chr8 (98-195)||(1063489-1063586)
chr8 (98-198)||(45236047-45236147)
chr8 (120-186)||(30904050-30904116)
chr8 (98-195)||(40248380-40248477)
chr8 (100-195)||(17084116-17084211)
chr8 (100-195)||(24927933-24928028)
chr8 (110-195)||(17469249-17469334)
chr8 (98-195)||(30481430-30481527)
chr8 (98-198)||(24870030-24870130)
[»] chr3 (9 HSPs)
chr3 (98-195)||(44172608-44172705)
chr3 (98-195)||(44179308-44179405)
chr3 (100-195)||(39655282-39655377)
chr3 (98-199)||(19111716-19111817)
chr3 (107-199)||(34119647-34119739)
chr3 (100-195)||(23546951-23547046)
chr3 (90-195)||(34154388-34154493)
chr3 (98-151)||(39728653-39728706)
chr3 (98-198)||(23580809-23580909)
[»] scaffold0005 (1 HSPs)
scaffold0005 (117-195)||(211365-211443)
[»] scaffold0036 (1 HSPs)
scaffold0036 (107-195)||(33384-33472)


Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 83 - 466
Target Start/End: Original strand, 33916130 - 33916513
Alignment:
Q  83 agggataataaattaaattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttga 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33916130 agggataataaattaaattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgatttga 33916229  T
Q  183 aatccgggaaaactcaaccctagtccaagatggaaaacccaaannnnnnnctttggttcctgcggatacccacaagtataatctttgttgtcatgtctac 282  Q
    |||||||||||||||||||||||||||||||| ||||||||||       ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  33916230 aatccgggaaaactcaaccctagtccaagatgaaaaacccaaatttttttctttggttcgtgcggatacccacaagtataatctttgttgtcatgtctac 33916329  T
Q  283 tcatatccctaaatgtgggatatcatgtagtaattgcacaattaatgaatatgaagttattttggttgattgaggtgaaagagttgatgaacaggttgtt 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33916330 tcatatccctaaatgtgggatatcatgtagtaattgcacaattaatgaatatgaagttattttggttgattgaggtgaaagagttgatgaacaggttgtt 33916429  T
Q  383 aaggatggcctatgattcgattctcacctttaacaaaatatcaacaaatgaataattaacatactaacattgtttgtcttttct 466  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33916430 aaggatggcctataattcgattctcacctttaacaaaatatcaacaaatgaataattaacatactaacattgtttgtcttttct 33916513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 33916033 - 33916087
Alignment:
Q  12 agagacagaacttagagaggtgattgtgtgagtaaaatgatttagggtttgagtt 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33916033 agagacagaacttagagaggtgattgtgtgagtaaaatgatttagggtttgagtt 33916087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 47550460 - 47550360
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaactc 197  Q
    |||||||||||||||||| | ||||||||||| |||  |||| ||||| ||||| ||| ||| ||||| | || ||||||||||| ||| ||||||||||    
T  47550460 aattttttacatttgggacgggtttgggtatgggttcggggtgggtacctatatacctgttacccgtcccatacccgtgttttgagatcggggaaaactc 47550361  T
Q  198 a 198  Q
    |    
T  47550360 a 47550360  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 99 - 198
Target Start/End: Original strand, 42907875 - 42907974
Alignment:
Q  99 attttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaactca 198  Q
    ||||| |||||| |||| ||||||||||||| | |  |||| ||||| |||||||| ||||  |||| ||||||||||||||||| || | |||||||||    
T  42907875 attttctacattcgggacgagtttgggtatgggctcggggtgggtacctatatccccattactcgtcccgtatccgtgttttgaattcggagaaaactca 42907974  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 195
Target Start/End: Complemental strand, 14606013 - 14605935
Alignment:
Q  117 gagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    ||||||||||||| |||  |||| ||||| ||||||||| ||| |||||||||| |||| |||||||||| | ||||||    
T  14606013 gagtttgggtatgggttcggggtgggtacatatatccctgttacccgtctcgtacccgtattttgaaatcggagaaaac 14605935  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 11028053 - 11028158
Alignment:
Q  90 ataaattaaattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgg 189  Q
    ||||| ||| ||||||||||||||||   |||||||||||||||  |||| ||||| ||||| ||  ||| ||||| | || ||||||||||| ||| ||    
T  11028053 ataaagtaatttttttacatttgggacaggtttgggtatgagttcggggtgggtacctatatacccgttacccgtcccatacccgtgttttgagatcggg 11028152  T
Q  190 gaaaac 195  Q
    ||||||    
T  11028153 gaaaac 11028158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 180
Target Start/End: Complemental strand, 33516178 - 33516097
Alignment:
Q  99 attttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgtttt 180  Q
    |||||||||||||| || | ||||||||||  |||  |||| ||||||||||||||| ||| || ||||||| |||||||||    
T  33516178 attttttacatttgagacgggtttgggtataggttcggggtgggtacttatatccctgttacccatctcgtacccgtgtttt 33516097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 48459469 - 48459566
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||||||||||||||| || |||||||| |||  |||| ||||| ||||| ||| ||| ||||  | || || |||||||||||| ||||||||    
T  48459469 aattttttacatttgggatgggtatgggtatgggttcggggtgggtacctatatacctgttacccgttccatacccatgttttgaaatcggggaaaac 48459566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 35304607 - 35304567
Alignment:
Q  114 gatgagtttgggtatgagttttgggtaggtacttatatccc 154  Q
    ||||||||||||||||||||| |||||||||| ||||||||    
T  35304607 gatgagtttgggtatgagtttggggtaggtacctatatccc 35304567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 185
Target Start/End: Complemental strand, 12075737 - 12075651
Alignment:
Q  99 attttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaat 185  Q
    ||||| ||||||  ||| ||||||| ||| |||||| |||| ||||| ||| ||||||||| | ||| |||| ||||||||||||||    
T  12075737 attttctacattccggacgagtttgagtacgagtttggggtgggtacatatctccctattacctgtcacgtacccgtgttttgaaat 12075651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 29527821 - 29527897
Alignment:
Q  119 gtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    ||||||||||| |||  |||| ||||| ||||||||  ||| ||||| |||| |||| |||||||||| ||||||||    
T  29527821 gtttgggtatgggttcggggtgggtacatatatccccgttacccgtcacgtacccgtattttgaaatcggggaaaac 29527897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 31782622 - 31782698
Alignment:
Q  119 gtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||||||||||| |||| ||||| ||||||||  ||| | ||  |||| |||| |||||||||| ||||||||    
T  31782622 gtttgggtatgagtttggggtgggtacatatatccccgttacctgtaccgtacccgtattttgaaatcggggaaaac 31782698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 98 - 198
Target Start/End: Original strand, 45256806 - 45256906
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaactc 197  Q
    |||||||||||||||||| | |||| |||||| |||  |||| ||||||||||| || |||| ||||||| || ||||||||||||||| ||||||||||    
T  45256806 aattttttacatttgggacgggtttaggtatgggttcggggtgggtacttatatacccattaaccgtctcatacccgtgttttgaaatcggggaaaactc 45256905  T
Q  198 a 198  Q
    |    
T  45256906 a 45256906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 37999466 - 37999563
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||||||||||||| | |||||||||||||||  |||| ||||||||||| ||  ||| ||||||| || ||||||||||| ||| ||||||||    
T  37999466 aattttttacatttgggacgggtttgggtatgagttcggggtgggtacttatatacccgttacccgtctcatacccgtgttttgagatcggggaaaac 37999563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 99 - 186
Target Start/End: Original strand, 30696908 - 30696995
Alignment:
Q  99 attttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatc 186  Q
    ||||||||||||||||||  |||||||||||||||  |||| ||||| |||||| || ||| ||||||||||||| |||||| |||||    
T  30696908 attttttacatttgggataggtttgggtatgagttcggggtgggtacatatatctctgttacccgtctcgtatccatgttttaaaatc 30696995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 43371557 - 43371637
Alignment:
Q  119 gtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaactcaa 199  Q
    |||||||||||||||| |||| ||||| ||||||||  ||| ||||| |||| |||| |||| ||||| ||||||||||||    
T  43371557 gtttgggtatgagtttggggtgggtacatatatccccgttacccgtcccgtacccgtattttaaaatcggggaaaactcaa 43371637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 100 - 195
Target Start/End: Complemental strand, 24414236 - 24414141
Alignment:
Q  100 ttttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||||||||||| | ||||||||||| |||  |||| ||||| ||||| ||| ||| ||||| | || ||||||||||| ||| ||||||||    
T  24414236 ttttttacatttgggacgggtttgggtatgggttcggggtgggtacctatatacctgttacccgtcccatacccgtgttttgagatcggggaaaac 24414141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 13705467 - 13705367
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaactc 197  Q
    ||||||| |||||||||| | |||| |||||| |||  |||| ||||| ||||| ||  ||| | ||||| || ||||||||||||||| ||||||||||    
T  13705467 aatttttcacatttgggacgggtttaggtatgggttcggggtgggtacctatatacccgttacctgtctcatacccgtgttttgaaatcggggaaaactc 13705368  T
Q  198 a 198  Q
    |    
T  13705367 a 13705367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 38342604 - 38342524
Alignment:
Q  119 gtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaactcaa 199  Q
    ||||||||||| |||  |||| ||||| ||||||||  ||| ||||| ||||||||| |||| ||||| ||||||||||||    
T  38342604 gtttgggtatgggttcggggtgggtacatatatccccgttacccgtcccgtatccgtattttaaaatcggggaaaactcaa 38342524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 195
Target Start/End: Complemental strand, 44746214 - 44746118
Alignment:
Q  99 attttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    ||||| ||||||||||| | ||||| ||||||||||   || ||||| ||||| || |||| ||||| | ||| |||||||||||||| ||||||||    
T  44746214 attttctacatttgggacgggtttgagtatgagtttgaagtgggtacatatatacccattacccgtcccatattcgtgttttgaaatcggggaaaac 44746118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 198
Target Start/End: Original strand, 45115541 - 45115641
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaactc 197  Q
    |||||||||||||||||||| ||||   |||| |||  || | ||||| ||||| ||| ||| ||||||| || |||||||||||||||  |||||||||    
T  45115541 aattttttacatttgggatgggtttaactatgggttcgggatgggtacctatatacctgttacccgtctcatacccgtgttttgaaatcgaggaaaactc 45115640  T
Q  198 a 198  Q
    |    
T  45115641 a 45115641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 13531869 - 13531903
Alignment:
Q  32 tgattgtgtgagtaaaatgatttagggtttgagtt 66  Q
    ||||||||||||| |||||||||||||||||||||    
T  13531869 tgattgtgtgagtgaaatgatttagggtttgagtt 13531903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 89 - 195
Target Start/End: Original strand, 15546718 - 15546824
Alignment:
Q  89 aataaattaaattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccg 188  Q
    |||||||  |||||||||||||||||| | || |||||||| |||  |||| ||||  |||| || | ||| ||||| | || ||||||||||||||| |    
T  15546718 aataaatataattttttacatttgggaagggtatgggtatgggttcagggtgggtatatataaccatgttacccgtcccatacccgtgttttgaaatcgg 15546817  T
Q  189 ggaaaac 195  Q
    |||||||    
T  15546818 ggaaaac 15546824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 199
Target Start/End: Complemental strand, 17845510 - 17845396
Alignment:
Q  85 ggataataaattaaattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaa 184  Q
    |||||||||||| | ||||||||||| | || | ||||||||||| |||  |||| |||||||||||  | |||| | ||||| ||  ||||||||||||    
T  17845510 ggataataaattgatttttttacattcgagacgggtttgggtatgggttaagggtgggtacttatatgtccattaccggtctcatactcgtgttttgaaa 17845411  T
Q  185 tccgggaaaactcaa 199  Q
    ||   ||||||||||    
T  17845410 tcgaagaaaactcaa 17845396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 182
Target Start/End: Complemental strand, 8916043 - 8915959
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttga 182  Q
    |||||||||||||||||| | ||||| ||||| |||  |||| ||||| ||||| ||| ||| ||||| | || |||||||||||    
T  8916043 aattttttacatttgggacgggtttgagtatgggttcggggtgggtacctatatacctgttacccgtcccatacccgtgttttga 8915959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 194
Target Start/End: Complemental strand, 34544416 - 34544320
Alignment:
Q  99 attttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtg-ttttgaaatccgggaaaa 194  Q
    ||||| |||||| |||| | ||||| |||||||||||| || ||||  |||||| || |||  | ||||||||||||| |||||||||| |||||||    
T  34544416 attttctacattcgggaggggtttgagtatgagttttgtgtgggtatctatatctctgttacacatctcgtatccgtgtttttgaaatcggggaaaa 34544320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 98 - 195
Target Start/End: Complemental strand, 45866291 - 45866194
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||||||||||||||| || ||||||||||||| |||| ||||| ||||| |  |||| | ||||| || ||||||||||||||| ||||||||    
T  45866291 aattttttacatttgggatgggtatgggtatgagtttggggtgggtacctatatactcattacctgtctcatacccgtgttttgaaatcggggaaaac 45866194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 204
Target Start/End: Complemental strand, 47644979 - 47644860
Alignment:
Q  83 agggataataaattaaattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttga 182  Q
    |||||||||||||||  | ||||||||| |||| |||| ||| ||||||||  |||||||||||| |||||| |||||||||| |||| | |||||||||    
T  47644979 agggataataaattat-tattttacattcgggacgagtatggatatgagttcggggtaggtacttctatccc-attatccgtcccgtacctgtgttttga 47644882  T
Q  183 aatccgggaaaactcaacccta 204  Q
     ||| |||||||| ||| ||||    
T  47644881 gatcggggaaaacccaaaccta 47644860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 195
Target Start/End: Complemental strand, 44615571 - 44615484
Alignment:
Q  108 atttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||| | |||||||||||||||| |||| ||||| ||||| ||| ||| ||||| | || ||||||||| ||||| ||||||||    
T  44615571 atttgggacgggtttgggtatgagtttggggtgggtacctatatacctgttacccgtcccatacccgtgtttttaaatcagggaaaac 44615484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 195
Target Start/End: Original strand, 44792998 - 44793085
Alignment:
Q  108 atttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||| | |||||||||||||||| |||| ||||| ||||| ||| ||| ||||| | || ||||||||| ||||| ||||||||    
T  44792998 atttgggacgggtttgggtatgagtttggggtgggtacctatatacctgttacccgtcccatacccgtgtttttaaatcagggaaaac 44793085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 17134930 - 17135027
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||||||| ||||| |||| |||||||| |||  |||  ||||| ||||| ||  ||| ||||||| || ||||||||||||||| ||||||||    
T  17134930 aattttttacatatgggacgagtatgggtatgggttcggggatggtacctatatacccgttacccgtctcatacccgtgttttgaaatcggggaaaac 17135027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 198
Target Start/End: Original strand, 28297919 - 28298017
Alignment:
Q  100 ttttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaactca 198  Q
    |||||||||||||||| | ||||||||||| |||  |||| ||||| ||||| ||  ||| ||||| | || |||||||| || ||| |||||||||||    
T  28297919 ttttttacatttgggacgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcggggaaaactca 28298017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 195
Target Start/End: Complemental strand, 36187323 - 36187229
Alignment:
Q  101 tttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    ||||||||||||||| | ||||||||||| |||  |||| ||||| ||||| ||  ||| ||||| | || ||||||||||| ||| ||||||||    
T  36187323 tttttacatttgggacgggtttgggtatgggttcagggtgggtacctatatacccgttacccgtcccatacccgtgttttgagatcggggaaaac 36187229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 198
Target Start/End: Complemental strand, 49250877 - 49250779
Alignment:
Q  100 ttttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaactca 198  Q
    |||||||||||||||| | ||||||||||| |||   ||| | ||| ||||| || |||| ||||| | || ||||||||||| ||| |||||||||||    
T  49250877 ttttttacatttgggacgggtttgggtatgggttcgaggtggatacctatatacccattacccgtcccatacccgtgttttgagatcggggaaaactca 49250779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 195
Target Start/End: Complemental strand, 18354186 - 18354089
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||||||||||||| |||| |||||||  |||  |||| || |||||||| ||  ||| ||||| | || || |||||||||||| ||||||||    
T  18354186 aattttttacatttgggacgagtatgggtatcggttcggggtgggaacttatatacccgttacccgtcccatacccatgttttgaaatcggggaaaac 18354089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 29936399 - 29936496
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||||||||||||| | ||||||||||| |||  |||| ||||| ||||| ||  ||| ||||| | || |||| |||||| ||| ||||||||    
T  29936399 aattttttacatttgggacgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtattttgagatcggggaaaac 29936496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 34060088 - 34060031
Alignment:
Q  141 ggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaactca 198  Q
    ||||| ||||| ||| ||||||||||| || |||||||||||||||  ||||||||||    
T  34060088 ggtacctatatacctgttatccgtctcatacccgtgttttgaaatcgaggaaaactca 34060031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 42439776 - 42439723
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatat 151  Q
    ||||||||||||||||||||||||||| |||| |||  |||| ||||| |||||    
T  42439776 aattttttacatttgggatgagtttggatatgggttcggggtgggtacctatat 42439723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 51421841 - 51421938
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||||||||||||| | ||||||||||| |||  |||| ||||| ||||| | | ||| ||||| | || ||||||||||| ||| || |||||    
T  51421841 aattttttacatttgggacgggtttgggtatgggttcggggtgggtacatatatacatgttacccgtcccatacccgtgttttgagatcgggaaaaac 51421938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 35069974 - 35069894
Alignment:
Q  119 gtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaactcaa 199  Q
    ||||| ||||| |||  |||| ||||| ||||||||| ||| |||||| ||| |||| || ||||||| ||||||||||||    
T  35069974 gtttgagtatgggttcggggtgggtacatatatccctgttacccgtcttgtacccgtattatgaaatcggggaaaactcaa 35069894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 199
Target Start/End: Complemental strand, 256597 - 256497
Alignment:
Q  99 attttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaactca 198  Q
    ||||| ||||||| ||| | ||||||||||| |||| |||| ||||| ||||| || |||| |||||||||| || |||||||||||| |||||||||||    
T  256597 attttctacatttaggaggggtttgggtatgggtttggggtgggtacctatatgcccattacccgtctcgtacccatgttttgaaatcggggaaaactca 256498  T
Q  199 a 199  Q
    |    
T  256497 a 256497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 101 - 195
Target Start/End: Original strand, 18908878 - 18908972
Alignment:
Q  101 tttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||||| |||  | |||||||||||||||| |||| ||||| ||||||| | ||| ||||| | ||||||| |||||||||| ||||||||    
T  18908878 tttttacattcgggtagggtttgggtatgagtttggggtgggtacatatatccttgttacccgtcccatatccgtattttgaaatcggggaaaac 18908972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 27738754 - 27738851
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||||||||||||| | ||||||||||| |||  |||| ||||| |||||  || ||| ||||| | || ||||||||||||||| ||||||||    
T  27738754 aattttttacatttgggacgggtttgggtatgggttcggggtgggtacatatatatctgttacccgtcccatacccgtgttttgaaatcggggaaaac 27738851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 32053072 - 32053167
Alignment:
Q  100 ttttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||||||| ||| | ||||||||||| |||| |||| ||||| ||||| ||  ||| ||||| | ||||| |||||||||||| ||||||||    
T  32053072 ttttttacattttggacgggtttgggtatgggtttggggtgggtacatatatacccgttacccgtcccatatccatgttttgaaatcggggaaaac 32053167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 2367308 - 2367405
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||| ||||||||| | ||||||||||| |||  |||| ||||||||||| ||  ||| ||||| | || ||||||||||| ||| ||||||||    
T  2367308 aattttttccatttgggacgggtttgggtatgggttcggggtgggtacttatatacccgttacccgtcccatacccgtgttttgagatcggggaaaac 2367405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 29199972 - 29199895
Alignment:
Q  117 gagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaa 194  Q
    ||||||||||||| |||  |||||| ||| ||||||||| ||| ||||| |||| |||| |||||||||| |||||||    
T  29199972 gagtttgggtatgggttcggggtagatacatatatccctgttacccgtcccgtacccgtattttgaaatcggggaaaa 29199895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 32532522 - 32532619
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||||||||||||| | || || ||||| |||  |||| ||||| ||||| || |||| ||||| | || ||||||||||||||| ||||||||    
T  32532522 aattttttacatttgggacgggtatgagtatgggttcggggtgggtacctatatacccattacccgtcccatacccgtgttttgaaatcggggaaaac 32532619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 32853826 - 32853923
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||||||||||||| | ||||||||||| |||  |||| ||||| ||||| ||  ||| ||||| | || ||||||||||| ||| ||||||||    
T  32853826 aattttttacatttgggacgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgttttgagatcggggaaaac 32853923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 207
Target Start/End: Complemental strand, 14410940 - 14410852
Alignment:
Q  119 gtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaactcaaccctagtc 207  Q
    ||||||||||| |||  |||| ||||| ||||| ||  ||| ||||| | || ||||||||||||||| |||||||||||| |||||||    
T  14410940 gtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgttttgaaatctgggaaaactcaaacctagtc 14410852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 194
Target Start/End: Original strand, 24225680 - 24225776
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaa 194  Q
    |||||||||||||||||| | ||||||| ||| |||  |||| ||||| ||||| ||  ||| ||||| | |||||||||||||| ||| |||||||    
T  24225680 aattttttacatttgggacgggtttgggcatgggttcggggtgggtacctatatacccgttacccgtcccatatccgtgttttgagatcggggaaaa 24225776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 192
Target Start/End: Original strand, 12309554 - 12309648
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaa 192  Q
    |||||||||||||||||| | ||||||||||  |||  |||| ||||| ||||| ||| ||| ||||  | || ||||||||||||||| |||||    
T  12309554 aattttttacatttgggacgggtttgggtatcggttcggggtgggtacatatatacctgttacccgttccatacccgtgttttgaaatcagggaa 12309648  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 195
Target Start/End: Original strand, 15498309 - 15498403
Alignment:
Q  101 tttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    ||||||||||||||| | |||||||| || |||  || | ||||| ||||| || |||| | ||||| || ||||||||||||||| ||||||||    
T  15498309 tttttacatttgggacgggtttgggtgtgggttcgggatgggtacctatatacccattacctgtctcatacccgtgttttgaaatcggggaaaac 15498403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 20349037 - 20349142
Alignment:
Q  88 taataaattaaattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatcc 187  Q
    ||||||||||| |||||||||||||  | |  ||||||||||||||  |||| ||||| ||||||||  |||  |||| | || |||||||||||||||     
T  20349037 taataaattaa-ttttttacatttgcaacggatttgggtatgagttcggggtgggtacctatatccccgttactcgtcccatacccgtgttttgaaatcg 20349135  T
Q  188 gggaaaa 194  Q
    |||||||    
T  20349136 gggaaaa 20349142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 7393978 - 7393897
Alignment:
Q  113 ggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaa 194  Q
    ||||||||||| ||||| |||  |||| | ||| ||||| || |||||||||||| ||  |||||||||||||| |||||||    
T  7393978 ggatgagtttgagtatgggttcggggtggatacctatatacccattatccgtctcttactcgtgttttgaaatcggggaaaa 7393897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 10188179 - 10188126
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatat 151  Q
    |||||||||||||||||||| ||||||||||| |||  |||| ||||| |||||    
T  10188179 aattttttacatttgggatgggtttgggtatgggttcggggtgggtacctatat 10188126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 10925559 - 10925463
Alignment:
Q  87 ataataaattaaattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaa 184  Q
    |||||||||||  ||||||||||| || |||||||| |||||| |||  |||| | |||||||||| | |||| || ||||||| || ||||||||||    
T  10925559 ataataaattat-ttttttacattcggaatgagtttaggtatgggttcggggtggatacttatatctccattacccatctcgtacccatgttttgaaa 10925463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 12141367 - 12141464
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||||||||||||| | ||||||||||| |||  |||| ||||| ||||| ||  | | ||||| | |||||||||||||| ||  ||||||||    
T  12141367 aattttttacatttgggacgggtttgggtatgggttcggggtgggtacctatatacccgtcacccgtcccatatccgtgttttgagattggggaaaac 12141464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 34178403 - 34178338
Alignment:
Q  130 agttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    ||||| |||| ||||| ||||||| | ||| |||||||||| ||||||||||||||| ||| ||||    
T  34178403 agtttggggtgggtacctatatccttgttacccgtctcgtacccgtgttttgaaatcaggggaaac 34178338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 29246058 - 29245958
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaactc 197  Q
    |||||||||||||||||||| || |||||||| |||| |||| ||||| ||||| | | |||| |||| | || ||||||||||||||| | ||||||||    
T  29246058 aattttttacatttgggatgggtatgggtatgggtttggggtgggtacctatatacatgttattcgtcccatacccgtgttttgaaatcggagaaaactc 29245959  T
Q  198 a 198  Q
    |    
T  29245958 a 29245958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 98 - 185
Target Start/End: Complemental strand, 12834681 - 12834594
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaat 185  Q
    |||||||||||||||||| | || |||||||| |||  |||||||||| ||||| ||| ||| ||||| | ||||| |||||||||||    
T  12834681 aattttttacatttgggacgggtatgggtatgggttcggggtaggtacctatatacctgttacccgtcccatatccatgttttgaaat 12834594  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 4583101 - 4583198
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||||||||||||| | || |||||||| |||| |||| || || ||||| ||  ||| ||||| | || ||||||||||||||| ||||||||    
T  4583101 aattttttacatttgggacgggtatgggtatgggtttggggtgggaacctatatacccgttacccgtcccatacccgtgttttgaaatcggggaaaac 4583198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 5908795 - 5908695
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaactc 197  Q
    |||||||||||||||||| | ||||||||||| |||| ||||  |||| ||||| ||  ||| ||||| | || |||||||| || ||| ||||||||||    
T  5908795 aattttttacatttgggacgggtttgggtatgggtttggggtgtgtacatatatacccgttacccgtcccatacccgtgtttcgagatcggggaaaactc 5908696  T
Q  198 a 198  Q
    |    
T  5908695 a 5908695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 16311362 - 16311299
Alignment:
Q  136 gggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaactcaa 199  Q
    |||| ||||| ||||||||| ||||||||||||||  |||||||||||||| |  |||||||||    
T  16311362 gggtgggtacctatatccctgttatccgtctcgtactcgtgttttgaaatcggaaaaaactcaa 16311299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 4920808 - 4920905
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||||||||||||| | ||||||||||| |||  |||| | ||| ||||| ||  ||| ||||| | || ||||||||||| ||| ||||||||    
T  4920808 aattttttacatttgggacgggtttgggtatgggttcggggtggatacctatatacccgttacccgtcccatacccgtgttttgagatcggggaaaac 4920905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 27302783 - 27302746
Alignment:
Q  157 ttatccgtctcgtatccgtgttttgaaatccgggaaaa 194  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  27302783 ttatccgtctcatatccgtgttttgaaatcggggaaaa 27302746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 12866658 - 12866558
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaactc 197  Q
    |||||||||||||||||| | || |||||||| |||   ||| ||||| ||||| ||| ||| ||||| | || || |||||||||||| | ||||||||    
T  12866658 aattttttacatttgggacgggtatgggtatgggttcgcggtgggtacctatatacctgttacccgtcccatacccatgttttgaaatcggagaaaactc 12866559  T
Q  198 a 198  Q
    |    
T  12866558 a 12866558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 12980366 - 12980461
Alignment:
Q  100 ttttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||| ||||||||| | ||||||||||| |||  |||| ||||||||||| || |||| ||||| | || ||||||||||||||| ||||||||    
T  12980366 ttttttgcatttgggacgggtttgggtatgggttcggggtgggtacttatatacccattacccgtcccatacccgtgttttgaaatcggggaaaac 12980461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 195
Target Start/End: Complemental strand, 3227052 - 3226955
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||||||||||||||| || || ||||| |||  |||| ||||| ||||| ||| ||| ||||| | || ||||||||||||||| ||||||||    
T  3227052 aattttttacatttgggatgtgtatgagtatgggttcggggtgggtacctatattcctgttacccgtcccatacccgtgttttgaaatcggggaaaac 3226955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 195
Target Start/End: Original strand, 7779998 - 7780092
Alignment:
Q  101 tttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    ||||||||||||||| | ||||||||||  |||  |||| ||||| ||||| || |||||||||| | || ||||||||||| ||| ||||||||    
T  7779998 tttttacatttgggacgggtttgggtataggttcggggtgggtacctatatacccattatccgtcccatacccgtgttttgagatcggggaaaac 7780092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 98 - 195
Target Start/End: Complemental strand, 25980023 - 25979926
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||||||||||| | |  ||||||||||||||| |||| ||||| |||||  |  ||| ||||||| || | ||||||||||||| ||||||||    
T  25980023 aattttttacatttggaaaggatttgggtatgagtttggggtgggtacatatatatccgttacccgtctcatacctgtgttttgaaatcggggaaaac 25979926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 194
Target Start/End: Original strand, 16811717 - 16811812
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaa 194  Q
    |||||||||||||||||| |  |||||||||| |||  |||| ||||  ||||| || |||||||||||| || ||||||||||| ||| |||||||    
T  16811717 aattttttacatttgggacggctttgggtatgggttc-gggtgggtatctatatacccattatccgtctcatacccgtgttttgagatcggggaaaa 16811812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 204
Target Start/End: Complemental strand, 5565413 - 5565307
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaactc 197  Q
    |||||||||||||||||||| || |||||||| |||  |||| ||||| |||| |||  ||| || || | |||||||  ||||||||| |||||||| |    
T  5565413 aattttttacatttgggatgtgtatgggtatgggttaggggtgggtacatataaccccgttacccatcccatatccgtactttgaaatcagggaaaaccc 5565314  T
Q  198 aacccta 204  Q
    || ||||    
T  5565313 aaaccta 5565307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 195
Target Start/End: Original strand, 26622957 - 26623035
Alignment:
Q  117 gagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    ||||||||||||| |||  |||| ||||||||||| || |||| || || | || ||||||||||||||| ||||||||    
T  26622957 gagtttgggtatgggttcggggtgggtacttatatacccattacccatcccatacccgtgttttgaaatcagggaaaac 26623035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 16866156 - 16866253
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||||||||||||| | ||||||||||| |||  |||| ||||| ||||| ||  |||  |||| | || ||||||||||| ||| ||||||||    
T  16866156 aattttttacatttgggacgggtttgggtatgggttcggggtgggtacctatatacccgttactcgtcccatacccgtgttttgagatcggggaaaac 16866253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 41103643 - 41103740
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||||||||| ||| | ||||  ||||| |||  |||| ||||||||||| ||  ||| ||||| | || ||||||||||||||| ||||||||    
T  41103643 aattttttacatttaggacgggtttatgtatgggttcggggtgggtacttatatacccgttaaccgtcccatacccgtgttttgaaatcggggaaaac 41103740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 43507432 - 43507529
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||||||||||||| |||| | |||||| |||  |||| ||| | ||||| ||  ||| ||||||| || || |||||||||||| ||||||||    
T  43507432 aattttttacatttgggacgagtataggtatgggttcagggtgggtgcctatatacccgttacccgtctcatacccatgttttgaaatcggggaaaac 43507529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 43550479 - 43550422
Alignment:
Q  142 gtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaactcaa 199  Q
    |||| ||||||||||||| | |||||||||| ||||||| ||| | ||||||||||||    
T  43550479 gtacatatatccctattaccagtctcgtatctgtgttttaaaaacggggaaaactcaa 43550422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 45380086 - 45380191
Alignment:
Q  90 ataaattaaattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgg 189  Q
    ||||| ||| |||||||||||||||| |||||| |||||| |||  |||| ||||| ||||| ||  ||| ||||| | || |||| |||||||||| ||    
T  45380086 ataaagtaatttttttacatttgggacgagtttaggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtattttgaaatcggg 45380185  T
Q  190 gaaaac 195  Q
     |||||    
T  45380186 aaaaac 45380191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 27063146 - 27063226
Alignment:
Q  119 gtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaactcaa 199  Q
    |||||||||||||||  ||||  |||| ||||||||  |||||||||  ||| |||| ||||||||||  |||||||||||    
T  27063146 gtttgggtatgagttcggggtgagtacatatatccccgttatccgtcctgtacccgtattttgaaatcgaggaaaactcaa 27063226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 198
Target Start/End: Original strand, 30650618 - 30650718
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaactc 197  Q
    |||||||||||||||||| |  |||||||||| |||  |||| ||||| ||||| ||  ||| ||||| | || ||||||||||| ||  ||||||||||    
T  30650618 aattttttacatttgggacggatttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgttttgagattggggaaaactc 30650717  T
Q  198 a 198  Q
    |    
T  30650718 a 30650718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 45885871 - 45885771
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaactc 197  Q
    |||||||||||||||||| |  ||| |||||| |||  |||| ||||| ||||| | | ||| ||||| | || ||||||||||| ||| ||||||||||    
T  45885871 aattttttacatttgggacggattttggtatgggttcggggtgggtacctatatacttgttacccgtcccatacccgtgttttgagatcggggaaaactc 45885772  T
Q  198 a 198  Q
    |    
T  45885771 a 45885771  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 1063489 - 1063586
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    ||||||||||| ||||||||  ||||||||||||||  |||| ||||||||||| ||  ||| ||||| | || ||||||||||||||| || |||||    
T  1063489 aattttttacacttgggatggatttgggtatgagttcggggtgggtacttatatacccgttaaccgtcccatacccgtgttttgaaatcgggaaaaac 1063586  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 198
Target Start/End: Original strand, 45236047 - 45236147
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaactc 197  Q
    |||||||||||||||||| | || ||| |||| |||  |||| ||||| ||||| || |||| ||||| | || ||||||||||||||| ||||||||||    
T  45236047 aattttttacatttgggacgggtatggatatgggttcggggtgggtacctatatacccattacccgtcccatacccgtgttttgaaatcagggaaaactc 45236146  T
Q  198 a 198  Q
    |    
T  45236147 a 45236147  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 186
Target Start/End: Original strand, 30904050 - 30904116
Alignment:
Q  120 tttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatc 186  Q
    |||||||||| || | |||| |||||||||||| | |||| |||||||||| |||||||||||||||    
T  30904050 tttgggtatgggtatggggtgggtacttatatctccattacccgtctcgtacccgtgttttgaaatc 30904116  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 98 - 195
Target Start/End: Complemental strand, 40248477 - 40248380
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||||||||||||| |  | |||||||| |||  || | ||||| ||||| ||  ||||||||||| || ||||||||||||||| ||||||||    
T  40248477 aattttttacatttgggacggatatgggtatgggttcgggatgggtacctatatacccgttatccgtctcatacccgtgttttgaaatcggggaaaac 40248380  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 195
Target Start/End: Complemental strand, 17084211 - 17084116
Alignment:
Q  100 ttttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    ||||||||||| | |||| |||||| ||||||||  |||| ||||  ||||||||  ||| |||||||||| ||||||||| ||||| | ||||||    
T  17084211 ttttttacattcgtgatgggtttggatatgagttcggggtgggtatctatatccccgttacccgtctcgtacccgtgttttaaaatcggagaaaac 17084116  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 24927933 - 24928028
Alignment:
Q  100 ttttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||||||||||| | ||||||||||| |||  |||| ||||| ||||| ||  ||| ||||||| || |||||||| || ||| ||||||||    
T  24927933 ttttttacatttgggacgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtctcatacccgtgtttcgagatcagggaaaac 24928028  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 195
Target Start/End: Original strand, 17469249 - 17469334
Alignment:
Q  110 ttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||| | ||||||||||| |||| |||| ||||| ||||| ||  ||| ||||| | || ||||||||||||||| ||||||||    
T  17469249 ttgggacgggtttgggtatgggtttggggtgggtacctatatacccgttacccgtcccatacccgtgttttgaaatcggggaaaac 17469334  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 195
Target Start/End: Complemental strand, 30481527 - 30481430
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    ||||||||||||| |||| ||||||||||||| |||  |||| ||||| |||||||  ||||  |||||| ||  ||| |||||||||| || |||||    
T  30481527 aattttttacattcgggacgagtttgggtatgggttcggggtgggtacctatatcctcattactcgtctcatactcgtattttgaaatcaggaaaaac 30481430  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 24870130 - 24870030
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaactc 197  Q
    |||||||||||||||||| | |||| |||||| | |  |||| ||||| ||||| ||  ||| ||||| | || ||||||||| ||||| ||||||||||    
T  24870130 aattttttacatttgggacgggtttaggtatgggctcggggtgggtacctatatacccgttacccgtcacatacccgtgttttaaaatcggggaaaactc 24870031  T
Q  198 a 198  Q
    |    
T  24870030 a 24870030  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 44172608 - 44172705
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||||||||||||| | ||||||||||| |||  |||| ||||||||||| ||  ||| ||||| | || ||||||||||| ||| ||||||||    
T  44172608 aattttttacatttgggacgggtttgggtatgggttcggggtgggtacttatatacccgttacccgtcccatacccgtgttttgagatcggggaaaac 44172705  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 44179308 - 44179405
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||||||||||||| | ||||||||||| |||  |||| ||||||||||| ||  ||| ||||| | || ||||||||||| ||| ||||||||    
T  44179308 aattttttacatttgggacgggtttgggtatgggttcggggtgggtacttatatacccgttacccgtcccatacccgtgttttgagatcggggaaaac 44179405  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 100 - 195
Target Start/End: Complemental strand, 39655377 - 39655282
Alignment:
Q  100 ttttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    ||||||||||||| || | ||||||||||| |||| |||| ||||| ||||| ||| ||| ||||| | || ||||||||||| ||| ||||||||    
T  39655377 ttttttacatttgagacgggtttgggtatgggtttggggtgggtacctatatacctgttacccgtcccatacccgtgttttgagatcggggaaaac 39655282  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 98 - 199
Target Start/End: Original strand, 19111716 - 19111817
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaactc 197  Q
    |||||| ||||||| | | | ||||||| ||| |||| |||| ||||||||||| ||  |||||| || |||| ||||||||||||||| || |||||||    
T  19111716 aattttctacattttgtacgggtttgggcatgggtttagggtgggtacttatatacccgttatccatcccgtacccgtgttttgaaatcgggaaaaactc 19111815  T
Q  198 aa 199  Q
    ||    
T  19111816 aa 19111817  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 199
Target Start/End: Original strand, 34119647 - 34119739
Alignment:
Q  107 catttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaactcaa 199  Q
    ||||||||| |  |||||||||| |||  |||| ||||| ||||| ||| ||||||||||| || ||||||||| ||||| || |||||||||    
T  34119647 catttgggacggatttgggtatgggttcggggtgggtacctatatacctgttatccgtctcatacccgtgttttaaaatcgggaaaaactcaa 34119739  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 195
Target Start/End: Complemental strand, 23547046 - 23546951
Alignment:
Q  100 ttttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||||||||||||||| ||||||||||||| |||  |||| ||||| ||||| ||  ||| ||||| | || |||||||| || ||| ||||||||    
T  23547046 ttttttacatttgggacgagtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcggggaaaac 23546951  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 34154388 - 34154493
Alignment:
Q  90 ataaattaaattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgg 189  Q
    ||||| ||| |||||||||||||||| | || |||||||| |||  |||| ||||| ||||| | | ||| |||| || || || |||||||||||| ||    
T  34154388 ataaagtaatttttttacatttgggacgggtatgggtatgggttcggggtgggtacctatattcttgttacccgtttcatacccatgttttgaaatcggg 34154487  T
Q  190 gaaaac 195  Q
    ||||||    
T  34154488 gaaaac 34154493  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 39728653 - 39728706
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatat 151  Q
    |||||||||||||||||| | ||||||||||| |||  |||| |||||||||||    
T  39728653 aattttttacatttgggacgggtttgggtatgggttcggggtgggtacttatat 39728706  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 198
Target Start/End: Original strand, 23580809 - 23580909
Alignment:
Q  98 aattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaactc 197  Q
    ||||||||||||||||||| ||| |||||||| |||  | || ||||| ||||| ||  ||| |||| || ||  |||||||||||||  ||||||||||    
T  23580809 aattttttacatttgggataagtgtgggtatgggttcggagtgggtacctatatacccgttacccgtttcatactcgtgttttgaaattggggaaaactc 23580908  T
Q  198 a 198  Q
    |    
T  23580909 a 23580909  T

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Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 195
Target Start/End: Original strand, 211365 - 211443
Alignment:
Q  117 gagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    ||||||||||||| |||  |||| ||||| ||||||||| ||| |||||||||| |||| |||||||||| | ||||||    
T  211365 gagtttgggtatgggttcggggtgggtacatatatccctgttacccgtctcgtacccgtattttgaaatcggagaaaac 211443  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 33384 - 33472
Alignment:
Q  107 catttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgttttgaaatccgggaaaac 195  Q
    |||| |||| ||||||||||||| |||  |||| ||||| ||||| ||  ||| ||||| | || ||||||||||||||| ||||||||    
T  33384 cattcgggacgagtttgggtatgggttcggggtgggtacatatatacccgttacccgtcccatacccgtgttttgaaatcggggaaaac 33472  T

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