View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12910_low_9 (Length: 385)
Name: NF12910_low_9
Description: NF12910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12910_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 93 - 355
Target Start/End: Complemental strand, 3586543 - 3586274
Alignment:
| Q |
93 |
aatgcttcagcaacaccaattcagactatattacaatgagaataataaacattgagaggaaagaa-----aaaattaataataatgaatcagataacatg |
187 |
Q |
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| T |
3586543 |
aatgcttcagcaacaccaattcagactatgttacaatgagaataataaacattgagaggaaagaagaaaaaaaattaataataatgaatcagataacatg |
3586444 |
T |
|
| Q |
188 |
aataaatactgaattggcagaatctattgaataaagaattaaatcaaagcaattgaaaggaaacaacaaaacaaaactaaa--tctgagatctatgtctt |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
3586443 |
aataaatactgaattggcagaatctattgaataaagaattaaatcaaagcaattgaaaggaaacaacaaaacaaaactaaagctttgagatctatgtctt |
3586344 |
T |
|
| Q |
286 |
atgctatctattaaatgaaaggcgtgattcaatttcgccagaaataaaaatcatattacaattaagatag |
355 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
3586343 |
atgctatctattaaatgaaaggcgtgattcaatttcaccagaaataaaaatcatattacaagtaagatag |
3586274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 98 - 206
Target Start/End: Complemental strand, 3596783 - 3596672
Alignment:
| Q |
98 |
ttcagcaacaccaattcagactatattacaatgagaataataaacattgagaggaaag----aaaaaattaataataatgaatcagataacatgaataaa |
193 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||| | ||| ||||| |||||||||| || |||||||||||||||||||||||| |
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| T |
3596783 |
ttcagccacaccaattcagactatattacaatcagaataataaacact-agatgaaagagaaaaaaaattaagaagaatgaatcagataacatgaataaa |
3596685 |
T |
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| Q |
194 |
tactgaattggca |
206 |
Q |
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|| | |||||||| |
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| T |
3596684 |
taatcaattggca |
3596672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 271 - 355
Target Start/End: Complemental strand, 3573646 - 3573563
Alignment:
| Q |
271 |
tgagatctatgtcttatgctatctattaaatgaaaggcgtgattcaatttcgccagaaataaaaatcatattacaattaagatag |
355 |
Q |
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||||||||||||||| ||||||||||||||||||||| ||| |||||||| | ||||||||||||||||||||||||||||| |
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| T |
3573646 |
tgagatctatgtcttgtgctatctattaaatgaaagg-gtgcttcaatttttctcaaaataaaaatcatattacaattaagatag |
3573563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 3573898 - 3573846
Alignment:
| Q |
91 |
tgaatgcttcagcaacaccaattcagactatattacaatgagaataataaaca |
143 |
Q |
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|||||| || ||| ||||||||||| ||||||||||||| ||||||||||||| |
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| T |
3573898 |
tgaatgtttaagccacaccaattcatactatattacaatcagaataataaaca |
3573846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 3573790 - 3573752
Alignment:
| Q |
217 |
aataaagaattaaatcaaagcaattgaaaggaaacaaca |
255 |
Q |
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||||||||||| ||||||||||||||||| ||||||||| |
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| T |
3573790 |
aataaagaattgaatcaaagcaattgaaaagaaacaaca |
3573752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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