View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12911_high_12 (Length: 235)

Name: NF12911_high_12
Description: NF12911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12911_high_12
NF12911_high_12
[»] chr7 (1 HSPs)
chr7 (18-218)||(38631916-38632116)
[»] chr1 (18 HSPs)
chr1 (75-185)||(34309414-34309524)
chr1 (103-185)||(35212031-35212113)
chr1 (63-173)||(19267688-19267798)
chr1 (77-179)||(35224984-35225086)
chr1 (75-172)||(35263089-35263186)
chr1 (103-184)||(45525533-45525611)
chr1 (107-182)||(45531633-45531708)
chr1 (89-179)||(35295863-35295953)
chr1 (75-160)||(35190453-35190538)
chr1 (76-172)||(35270514-35270610)
chr1 (75-145)||(35276639-35276709)
chr1 (26-179)||(19266324-19266477)
chr1 (75-135)||(35147470-35147530)
chr1 (103-174)||(8638977-8639048)
chr1 (97-179)||(35194564-35194646)
chr1 (82-137)||(35476415-35476470)
chr1 (75-145)||(35200037-35200107)
chr1 (75-139)||(35248381-35248445)
[»] chr3 (3 HSPs)
chr3 (75-180)||(19246963-19247068)
chr3 (75-180)||(17664560-17664665)
chr3 (97-185)||(899768-899856)
[»] chr2 (1 HSPs)
chr2 (74-177)||(33138611-33138714)


Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 38632116 - 38631916
Alignment:
Q  18 tactaatgttggctgtttagatccatatgtgagaggtatgcgattcaacaacataaaaggattgcgacgtgctagtgtaagaaacgatgggtggttggag 117  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38632116 tactaacgttggctgtttggatccatatgtgagaggtatgcgattcaacaacataaaaggattgcgacgtgctagtgtaagaaacgatgggtggttggag 38632017  T
Q  118 attcagatgggagagttcttcacttcagaccttaaagatgaagaaatccagatgagtgttatcgagaagcatggtgcgtatttgaagagaggcttctttg 217  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38632016 attcatatgggagagttcttcacttcagaccttaaagatgaagaaatccagatgagtgttatcgagaagcatggtgcgtatttgaagagaggcttctttg 38631917  T
Q  218 t 218  Q
    |    
T  38631916 t 38631916  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 185
Target Start/End: Complemental strand, 34309524 - 34309414
Alignment:
Q  75 aggattgcgacgtgctagtgtaagaaacgatgggtggttggagattcagatgggagagttcttcacttcagaccttaaagatgaagaaatccagatgagt 174  Q
    |||||||| |||| ||| ||||||||  ||||| |||||||||||| |||||||||||||||||| ||||  |||| |||||||||||||||| |||||     
T  34309524 aggattgcaacgtcctaatgtaagaagtgatggatggttggagattgagatgggagagttcttcaattcaagccttgaagatgaagaaatccaaatgagc 34309425  T
Q  175 gttatcgagaa 185  Q
    ||| |||||||    
T  34309424 gttgtcgagaa 34309414  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 35212113 - 35212031
Alignment:
Q  103 gatgggtggttggagattcagatgggagagttcttcacttcagaccttaaagatgaagaaatccagatgagtgttatcgagaa 185  Q
    |||||||||||||||||| |||||||||||||||||| |||   |||| |||||||||||||||| ||||||||| |||||||    
T  35212113 gatgggtggttggagattgagatgggagagttcttcaattctagccttgaagatgaagaaatccaaatgagtgttgtcgagaa 35212031  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 173
Target Start/End: Original strand, 19267688 - 19267798
Alignment:
Q  63 caacaacataaaaggattgcgacgtgctagtgtaagaaacgatgggtggttggagattcagatgggagagttcttcacttcagaccttaaagatgaagaa 162  Q
    |||||||| | |||||||| ||| ||||||||| |||||||| ||||||||||| ||||| || ||||| ||||||| ||||| ||||||||  ||||||    
T  19267688 caacaacaaagaaggattgtgacatgctagtgtgagaaacgacgggtggttggaaattcaaatcggagatttcttcatttcaggccttaaagtagaagaa 19267787  T
Q  163 atccagatgag 173  Q
     |||| |||||    
T  19267788 ttccatatgag 19267798  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 179
Target Start/End: Complemental strand, 35225086 - 35224984
Alignment:
Q  77 gattgcgacgtgctagtgtaagaaacgatgggtggttggagattcagatgggagagttcttcacttcagaccttaaagatgaagaaatccagatgagtgt 176  Q
    |||||| |||| ||| ||| |||| |||||| ||||| |||||| |||||||||||||||||| ||||| |||  ||||||||||| |||| ||||||||    
T  35225086 gattgcaacgtcctaatgtgagaagcgatggctggttagagattgagatgggagagttcttcatttcaggcctagaagatgaagaagtccaaatgagtgt 35224987  T
Q  177 tat 179  Q
    |||    
T  35224986 tat 35224984  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 172
Target Start/End: Complemental strand, 35263186 - 35263089
Alignment:
Q  75 aggattgcgacgtgctagtgtaagaaacgatgggtggttggagattcagatgggagagttcttcacttcagaccttaaagatgaagaaatccagatga 172  Q
    |||||||| |||| ||||||| |||| ||||||||||||||||||| ||||||| |||||||||| ||||| | |  || |||||||| |||||||||    
T  35263186 aggattgcaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagttcaggcatagaaaatgaagaagtccagatga 35263089  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 45525611 - 45525533
Alignment:
Q  103 gatgggtggttggagattcagatgggagagttcttcacttcagaccttaaagatgaagaaatccagatgagtgttatcgaga 184  Q
    |||||||||||||||||| ||||||||||||||   | ||||| |||| || |||||||| |||||||||||||||||||||    
T  45525611 gatgggtggttggagattgagatgggagagttc---aattcaggccttgaaaatgaagaagtccagatgagtgttatcgaga 45525533  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 45531708 - 45531633
Alignment:
Q  107 ggtggttggagattcagatgggagagttcttcacttcagaccttaaagatgaagaaatccagatgagtgttatcga 182  Q
    |||||| ||||||| |||||||||||||||||| ||||| |||| || |||||||| |||| ||||||||||||||    
T  45531708 ggtggtgggagattgagatgggagagttcttcaattcaggccttgaaaatgaagaagtccatatgagtgttatcga 45531633  T

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Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 179
Target Start/End: Original strand, 35295863 - 35295953
Alignment:
Q  89 ctagtgtaagaaacgatgggtggttggagattcagatgggagagttcttcacttcagaccttaaagatgaagaaatccagatgagtgttat 179  Q
    ||||||| ||||  |||||||||||||||||| |||||||||||||||||| ||||| | |   |||||||||| |||| |||||||||||    
T  35295863 ctagtgtgagaagtgatgggtggttggagattgagatgggagagttcttcaattcaggcttagtagatgaagaagtccaaatgagtgttat 35295953  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 75 - 160
Target Start/End: Complemental strand, 35190538 - 35190453
Alignment:
Q  75 aggattgcgacgtgctagtgtaagaaacgatgggtggttggagattcagatgggagagttcttcacttcagaccttaaagatgaag 160  Q
    |||||||| |||| ||||||| ||||  |||||||||||||||||| |||| ||||||||||||| ||||| |||  |||||||||    
T  35190538 aggattgcaacgtcctagtgtgagaagtgatgggtggttggagattgagatcggagagttcttcaattcaggcctagaagatgaag 35190453  T

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Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 35270610 - 35270514
Alignment:
Q  76 ggattgcgacgtgctagtgtaagaaacgatgggtggttggagattcagatgggagagttcttcacttcagaccttaaagatgaagaaatccagatga 172  Q
    ||||||| |||| ||||||| ||||  |||||||||||||||||| ||||||| |||||||||| ||||| | |  || |||||||| |||||||||    
T  35270610 ggattgcaacgtcctagtgtgagaagtgatgggtggttggagattgagatgggggagttcttcaattcaggcatagaaaatgaagaagtccagatga 35270514  T

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Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 145
Target Start/End: Complemental strand, 35276709 - 35276639
Alignment:
Q  75 aggattgcgacgtgctagtgtaagaaacgatgggtggttggagattcagatgggagagttcttcacttcag 145  Q
    |||||||| |||| ||||||| ||||  |||||||||||||||||| ||||||| |||||||||| |||||    
T  35276709 aggattgcaacgtcctagtgtgagaagagatgggtggttggagattgagatgggggagttcttcaattcag 35276639  T

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Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 179
Target Start/End: Complemental strand, 19266477 - 19266324
Alignment:
Q  26 ttggctgtttagatccatatgtgagaggtatgcgattcaacaacataaaaggattgcgacgtgctagtgtaagaaacgatgggtggttggagattcagat 125  Q
    ||||||||||||| |||||||||||||||| |  || |||||||| | |||| ||| ||| |||||| || ||| ||||||||| || |||||||  |||    
T  19266477 ttggctgtttagaaccatatgtgagaggtaggaaatacaacaacaaagaagggttgtgacatgctagggtgagatacgatgggttgtaggagattgggat 19266378  T
Q  126 gggagagttcttcacttcagaccttaaagatgaagaaatccagatgagtgttat 179  Q
      |||| ||||||| ||||  ||||||||  || ||| |||| |||||| ||||    
T  19266377 aagagatttcttcatttcactccttaaagtggacgaagtccatatgagttttat 19266324  T

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Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 35147530 - 35147470
Alignment:
Q  75 aggattgcgacgtgctagtgtaagaaacgatgggtggttggagattcagatgggagagttc 135  Q
    |||||||| |||| ||||||| |||| ||||||||||||||||||| ||||||| ||||||    
T  35147530 aggattgcaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttc 35147470  T

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Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 174
Target Start/End: Complemental strand, 8639048 - 8638977
Alignment:
Q  103 gatgggtggttggagattcagatgggagagttcttcacttcagaccttaaagatgaagaaatccagatgagt 174  Q
    |||||||||||||||| | |||||||||||||||||| ||||| | |  ||||||||||| |||| ||||||    
T  8639048 gatgggtggttggagactgagatgggagagttcttcaattcaggcttagaagatgaagaagtccaaatgagt 8638977  T

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Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 35194646 - 35194564
Alignment:
Q  97 agaaacgatgggtggttggagattcagatgggagagttcttcacttcagaccttaaagatgaagaaatccagatgagtgttat 179  Q
    |||| ||||||||||||||||||| | ||||| |||||||||| | ||  |||| ||||||||||| | || |||||||||||    
T  35194646 agaagcgatgggtggttggagattgaaatgggggagttcttcaatccaagccttgaagatgaagaagtgcaaatgagtgttat 35194564  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 35476470 - 35476415
Alignment:
Q  82 cgacgtgctagtgtaagaaacgatgggtggttggagattcagatgggagagttctt 137  Q
    |||||| ||||||| |||   |||||||||||||||||| ||||||||||||||||    
T  35476470 cgacgtcctagtgtgagacgtgatgggtggttggagattgagatgggagagttctt 35476415  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 145
Target Start/End: Complemental strand, 35200107 - 35200037
Alignment:
Q  75 aggattgcgacgtgctagtgtaagaaacgatgggtggttggagattcagatgggagagttcttcacttcag 145  Q
    |||||||| |||  ||||||| |||| ||||||||||||||||||| | || || |||||||||| |||||    
T  35200107 aggattgcaacgccctagtgtgagaagcgatgggtggttggagattgaaatcggggagttcttcaattcag 35200037  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 35248445 - 35248381
Alignment:
Q  75 aggattgcgacgtgctagtgtaagaaacgatgggtggttggagattcagatgggagagttcttca 139  Q
    |||||||| | || ||| ||| |||| |||||||||||| |||||| ||||||| ||||||||||    
T  35248445 aggattgcaaagttctattgtgagaagcgatgggtggtttgagattgagatgggggagttcttca 35248381  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 180
Target Start/End: Original strand, 19246963 - 19247068
Alignment:
Q  75 aggattgcgacgtgctagtgtaagaaacgatgggtggttggagattcagatgggagagttcttcacttcagaccttaaagatgaagaaatccagatgagt 174  Q
    |||||||| |||| ||||||| |||   ||||| |||||||||||| |||||||||| ||||| | ||||  ||| ||||||||||||||||| ||||||    
T  19246963 aggattgcaacgtcctagtgttagatgtgatggatggttggagattgagatgggagaattctttaattcaagcctcaaagatgaagaaatccacatgagt 19247062  T
Q  175 gttatc 180  Q
    ||||||    
T  19247063 gttatc 19247068  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 75 - 180
Target Start/End: Original strand, 17664560 - 17664665
Alignment:
Q  75 aggattgcgacgtgctagtgtaagaaacgatgggtggttggagattcagatgggagagttcttcacttcagaccttaaagatgaagaaatccagatgagt 174  Q
    |||||||| |||| ||||||| |||   ||||| |||||||||||| |||||||||| ||||| | ||||  ||| |||||||||||| |||| ||||||    
T  17664560 aggattgcaacgtcctagtgttagatgtgatggatggttggagattgagatgggagaattctttaattcaagcctcaaagatgaagaagtccacatgagt 17664659  T
Q  175 gttatc 180  Q
    ||||||    
T  17664660 gttatc 17664665  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 185
Target Start/End: Original strand, 899768 - 899856
Alignment:
Q  97 agaaacgatgggtggttggagattcagatgggagagttcttcacttcagaccttaaagatgaagaaatccagatgagtgttatcgagaa 185  Q
    |||| ||||||||||||||||||| ||||||||||||| |||| ||||   ||| |||  |||||| |||| ||||||||| |||||||    
T  899768 agaagcgatgggtggttggagattgagatgggagagttattcaattcaagacttgaaggagaagaagtccaaatgagtgttgtcgagaa 899856  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 177
Target Start/End: Original strand, 33138611 - 33138714
Alignment:
Q  74 aaggattgcgacgtgctagtgtaagaaacgatgggtggttggagattcagatgggagagttcttcacttcagaccttaaagatgaagaaatccagatgag 173  Q
    |||||||||  ||| ||| ||| ||||  |||||||||||||||||| |||||||| | ||||||| ||||  || ||||||||||||| |||  |||||    
T  33138611 aaggattgcagcgtcctactgtgagaagtgatgggtggttggagattgagatgggaaaattcttcaattcaagccctaaagatgaagaagtccgtatgag 33138710  T
Q  174 tgtt 177  Q
    ||||    
T  33138711 tgtt 33138714  T

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