View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12911_high_3 (Length: 577)
Name: NF12911_high_3
Description: NF12911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12911_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 259 - 543
Target Start/End: Original strand, 40749066 - 40749350
Alignment:
| Q |
259 |
tacctcattttgtattttattgacatatgtccaaactgacagttatgaggtcattgtttgattccagtgactattttacgtcaggatatacttttatttg |
358 |
Q |
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| T |
40749066 |
tacctcattttgtattttattgacatttgtccaaactgacagttatgagatcattgtttgattctagtgactattttacgccagaatatacttttatttg |
40749165 |
T |
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| Q |
359 |
ggtttagaatagaatcacgtgtataagtagtagttgaaagtcgccataaattgatccttcactgaagcatgaattatttacatgtgtatatattaaaatt |
458 |
Q |
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| T |
40749166 |
ggtttagaatagaatcacgcgtataagtagtagttgaaagtcgccataaattgatccttcactcaagcatgaattatttacatgtgtatatattaaaatt |
40749265 |
T |
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| Q |
459 |
aagagaaaataaaacgtgaaatgccatctataaaattgttctacaaacaatattcatttgcatatcatgttaaataaatcactta |
543 |
Q |
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| T |
40749266 |
aagagaaaataaaacgtgaaatgccatctataaaattgttctacaaacaatattcatttgcatatcatgttaaataaatcactta |
40749350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 154 - 267
Target Start/End: Original strand, 40748661 - 40748774
Alignment:
| Q |
154 |
taatttaaataattcaacatttttcggactttaattaaatagatcaaactttcaatttattcaatacacttcatatgtatgacctttttcacacttcttt |
253 |
Q |
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| T |
40748661 |
taatttaaataattcaacatttttcggactttaattaaatagatcaaactttcaatttattcaatacacttcatatgtatgacctttttcacacttcttt |
40748760 |
T |
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| Q |
254 |
catcctacctcatt |
267 |
Q |
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| T |
40748761 |
catcctacctcatt |
40748774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 77
Target Start/End: Original strand, 40748553 - 40748583
Alignment:
| Q |
47 |
tagtttatttcattacaaatttaattaaata |
77 |
Q |
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| T |
40748553 |
tagtttatttcattacaaatttaattaaata |
40748583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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