View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12911_high_5 (Length: 463)

Name: NF12911_high_5
Description: NF12911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12911_high_5
NF12911_high_5
[»] chr1 (2 HSPs)
chr1 (1-134)||(12247085-12247218)
chr1 (159-233)||(12247243-12247317)
[»] chr7 (3 HSPs)
chr7 (300-379)||(39719166-39719245)
chr7 (372-445)||(39720268-39720341)
chr7 (187-216)||(34010127-34010156)
[»] chr8 (7 HSPs)
chr8 (1-78)||(24899145-24899222)
chr8 (70-233)||(24897815-24897976)
chr8 (70-133)||(25401250-25401313)
chr8 (70-133)||(25497430-25497493)
chr8 (159-233)||(25401342-25401415)
chr8 (159-233)||(25497522-25497595)
chr8 (187-216)||(27649518-27649547)


Alignment Details
Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 12247085 - 12247218
Alignment:
Q  1 tgtggaaaaacggaagaaatacacagtagagggtacaaatcatgataaattatttttgagttaattgggttgcagttatttctttctgtttcttttttat 100  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12247085 tgtggaaaaacggaagagatacacagtagagggtataaatcatgataaattatttttgagttaattgggttgcagttatttctttctgtttcttttttat 12247184  T
Q  101 tgggttgggtcatacttaagtttcttttgttgtt 134  Q
    |||||||||||||| |||||||||||||||||||    
T  12247185 tgggttgggtcatagttaagtttcttttgttgtt 12247218  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 12247243 - 12247317
Alignment:
Q  159 gttgaaagttgggttggtcgtagcttatttttattatcagtgttccaaaagttaaattgtcttaacgaattcttc 233  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  12247243 gttgaaagttgggttggtcgtagcttatttttattatcagtgtttcaaaagttaaattgtcttaatgaattcttc 12247317  T

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Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 300 - 379
Target Start/End: Original strand, 39719166 - 39719245
Alignment:
Q  300 gtttgtcaccatatttaccagtggtcacaatcggtgcaattgatttcatggctgctgttataacttgacggtctgacagc 379  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39719166 gtttgtcaccatatttaccggtggtcacaatcggtgcaattgatttcatggctgctgttataacttgacggtctgacagc 39719245  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 372 - 445
Target Start/End: Original strand, 39720268 - 39720341
Alignment:
Q  372 ctgacagcaccgcattcccccaatcattgtggacatcttccataagttcaaaattttccaaacccaagctaagt 445  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39720268 ctgacagcaccgtattcccccaatcattgtgaacatcttccataagttcaaaattttccaaacccaagctaagt 39720341  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 216
Target Start/End: Original strand, 34010127 - 34010156
Alignment:
Q  187 ttttattatcagtgttccaaaagttaaatt 216  Q
    ||||||||||||||||||||||||||||||    
T  34010127 ttttattatcagtgttccaaaagttaaatt 34010156  T

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Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 24899222 - 24899145
Alignment:
Q  1 tgtggaaaaacggaagaaatacacagtagagggtacaaatcatgataaattatttttgagttaattgggttgcagtta 78  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  24899222 tgtggaaaaacggaagagatacacagtagagggtacaaatcaagataaattattttttagttaattgggttgcagtta 24899145  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 70 - 233
Target Start/End: Complemental strand, 24897976 - 24897815
Alignment:
Q  70 ttgcagttatttctttctgtttcttttttattgggttgggtcatacttaagtttcttttgttgttnnnnnnnnngtcnnnnnnnnnnnngttgaaagttg 169  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||          |||            ||| |||||||    
T  24897976 ttgcatttatttctttccgtttcttttttattgggttgggtcataattaagtttcttttgttgtgaaaaaaaaagtcattttttttg--gttcaaagttg 24897879  T
Q  170 ggttggtcgtagcttatttttattatcagtgttccaaaagttaaattgtcttaacgaattcttc 233  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||  ||||| |||||||||    
T  24897878 ggttggtcgtagcttatttttattatcagtgatccaaaagttaaattaacttaatgaattcttc 24897815  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 25401250 - 25401313
Alignment:
Q  70 ttgcagttatttctttctgtttcttttttattgggttgggtcatacttaagtttcttttgttgt 133  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  25401250 ttgcatttatttctttccgtttcttttttattgggttgggtcatagttaagtttcttttgttgt 25401313  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 25497430 - 25497493
Alignment:
Q  70 ttgcagttatttctttctgtttcttttttattgggttgggtcatacttaagtttcttttgttgt 133  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  25497430 ttgcatttatttctttccgtttcttttttattgggttgggtcatagttaagtttcttttgttgt 25497493  T

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Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 25401342 - 25401415
Alignment:
Q  159 gttgaaagttgggttggtcgtagcttatttttattatcagtgttccaaaagttaaattgtcttaacgaattcttc 233  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||  ||||| |||||||||    
T  25401342 gttgaaagttgggt-ggtcgtagcttatttttattttcagtgttccaaaagttaaattaacttaatgaattcttc 25401415  T

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Target: chr8; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 25497522 - 25497595
Alignment:
Q  159 gttgaaagttgggttggtcgtagcttatttttattatcagtgttccaaaagttaaattgtcttaacgaattcttc 233  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||  ||||| |||||||||    
T  25497522 gttgaaagttgggt-ggtcgtagcttatttttattttcagtgttccaaaagttaaattaacttaatgaattcttc 25497595  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 216
Target Start/End: Original strand, 27649518 - 27649547
Alignment:
Q  187 ttttattatcagtgttccaaaagttaaatt 216  Q
    ||||||||||||||||||||||||||||||    
T  27649518 ttttattatcagtgttccaaaagttaaatt 27649547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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