View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12911_high_6 (Length: 412)
Name: NF12911_high_6
Description: NF12911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12911_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 5 - 396
Target Start/End: Original strand, 35351302 - 35351693
Alignment:
| Q |
5 |
tagaggaatgaaagtgagagcagtagtagatgatgtaataggaaaaggaaacagacacaaagggtgaggaggtataaaagtgatgagagagaaaggtagt |
104 |
Q |
| |
|
|||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35351302 |
tagaggaaagaaagtgagagaagtggtagatgatgtaataggaaaaggaaacagacacaaagggtgaggaggtataaaagtgatgagagagaaaggtagt |
35351401 |
T |
|
| Q |
105 |
gtgagaaaatcagatttgtaaattcaattatttgcttaaattgaatatcagaagtgatgtttaaggaaaaactttttatttttatataggatgtgactat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35351402 |
gtgagaaaatcagatttgtaaattcaattatttgcttaaattgaatatcagaagtgatgtttaaggaaaaactttttatttttatataggatgtgactat |
35351501 |
T |
|
| Q |
205 |
ttcagcaaaaccaaatagcaacatattattcttagtggcatagttatcattgtacatgtgcatattattttacatgcatctcatcacattcacacatcgt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35351502 |
ttcagcaaaaccaaatagcaacatattattcttagtggcatagttatcattgtgcatgtgcatattattttacatgcatctcatcacattcacacatcgt |
35351601 |
T |
|
| Q |
305 |
agaaaaaatggttatctgctctgcatgttgacctttgttttttcatatcttttccttgacaatacaatttttaaacttacgtaggagaaaga |
396 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35351602 |
agaaaaaatggttatctgctctgcatgctgacctttgttttttcatatcttttccttgacaatacaatttttaaacttacgtaggagaaaga |
35351693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University