View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12911_high_8 (Length: 307)
Name: NF12911_high_8
Description: NF12911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12911_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 36404164 - 36404454
Alignment:
| Q |
1 |
gaaacttttaacgtttcctttgtggaagatgaaaactccgtagcaatctcatataacatgtttgataagtctgtcatcgctaggaaagttgttaatcaat |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36404164 |
gaaacttttaacgtttcttttgtggaagatgaaaactccgtagcaatctcatataacatgtttgataagtctgtcatcgctaggaaagttgttaatcaat |
36404263 |
T |
|
| Q |
101 |
ctggtttctttcaaatattcacgtgggggaatgaaaagaatcaatggaaccggttctattcagaaccaacagaccaatgtgataactatggaacatgtgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36404264 |
ctggtttctttcaaatattcacgtgggggaatgaaaagaatcaatggaaccggttctattcagaaccaacagaccaatgtgataactatggaacatgtgg |
36404363 |
T |
|
| Q |
201 |
atcaaacagtaattgtgacccttttaactttgacgactttaagtgcacttgtttacttggttttgaaccaaaatttccacgtgattggtat |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36404364 |
atcaaacagtaattgtgacccttttaactttgacgactttaagtgcacttgtttacttggttttgaaccaaaatttccacgtgattggtat |
36404454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 40 - 291
Target Start/End: Original strand, 36373531 - 36373782
Alignment:
| Q |
40 |
gtagcaatctcatataacatgtttgataagtctgtcatcgctaggaaagttgttaatcaatctggtttctttcaaatattcacgtgggggaatgaaaaga |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||| | |||||||||||||||||||||||||| ||| ||| |||| | |
|
|
| T |
36373531 |
gtagcaatctcatataacatgtttgataagtctgtcatagctaggatagttgttcagcaatctggtttctttcaaatattcacttggaacaatcaaaaaa |
36373630 |
T |
|
| Q |
140 |
atcaatggaaccggttctattcagaaccaacagaccaatgtgataactatggaacatgtggatcaaacagtaattgtgacccttttaactttgacgactt |
239 |
Q |
| |
|
|||||||||| |||||| || ||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
36373631 |
gtcaatggaacaggttctggtctgaaccaacaaaccaatgtgataactatggaacctgtggatcaaacagtaactgtgaccctttgaactttgaggactt |
36373730 |
T |
|
| Q |
240 |
taagtgcacttgtttacttggttttgaaccaaaatttccacgtgattggtat |
291 |
Q |
| |
|
|||||| |||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36373731 |
taagtgtacttgtctaccaggttttgaaccaaaatttccacgtgattggtat |
36373782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 2 - 291
Target Start/End: Original strand, 36397232 - 36397521
Alignment:
| Q |
2 |
aaacttttaacgtttcctttgtggaagatgaaaactccgtagcaatctcatataacatgtttgataagtctgtcatcgctaggaaagttgttaatcaatc |
101 |
Q |
| |
|
|||||||||| | ||| ||||||||||| || |||| |||||| | ||||| |||||||||||||||||||||| |||||| ||||||| | ||||| |
|
|
| T |
36397232 |
aaacttttaatgcttcttttgtggaagaagataactatgtagcactttcatacgacatgtttgataagtctgtcatagctaggttagttgttcagcaatc |
36397331 |
T |
|
| Q |
102 |
tggtttctttcaaatattcacgtgggggaatgaaaagaatcaatggaaccggttctattcagaaccaacagaccaatgtgataactatggaacatgtgga |
201 |
Q |
| |
|
||||||| ||||||||||||| ||| ||| |||||| |||||||||| |||||| |||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
36397332 |
tggtttcattcaaatattcacttggaacaatcaaaagagtcaatggaacaggttctggtcagaaccaacaaaccaatgtgataactatggaacgtgtgga |
36397431 |
T |
|
| Q |
202 |
tcaaacagtaattgtgacccttttaactttgacgactttaagtgcacttgtttacttggttttgaaccaaaatttccacgtgattggtat |
291 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
36397432 |
tcaaacagtaattgtgaccctttgaactttgagaactttaagtgcacgtgtttacttggttttgaaccaaaatttccaagcgattggtat |
36397521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 4 - 291
Target Start/End: Original strand, 36368876 - 36369164
Alignment:
| Q |
4 |
acttttaacgtttcctttgtggaagatgaaaactccgtagcaatctcatataacatgtttgataagtctgtcatcgctaggaaagttgttaatcaatctg |
103 |
Q |
| |
|
|||||||| ||||| || || |||||||| |||| |||||| | | ||||||||||| |||||||||||||| |||| | || ||| | ||||||| |
|
|
| T |
36368876 |
acttttaatgtttctttggttgaagatgacaactatgtagcacttacgtataacatgttcgataagtctgtcattactagaatagcggttcagcaatctg |
36368975 |
T |
|
| Q |
104 |
gtttctttcaaatattcacgtgggggaatgaaaagaatcaatggaaccggttctattcagaaccaacagaccaatgtgataactatggaacatgtggatc |
203 |
Q |
| |
|
|||||||||||| ||||| ||||| | | |||||| ||||||||||||| || || |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36368976 |
gtttctttcaaacattcatgtgggacagtcaaaagagccaatggaaccggtactggtctgaaccaacagaccaatgtgataactatggaacctgtggatc |
36369075 |
T |
|
| Q |
204 |
aaacagtaattgtgacccttttaactttgacgactttaagtgcacttgtttacttggttttgaa-ccaaaatttccacgtgattggtat |
291 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
36369076 |
aaacagtaattgtgacctttttaactttgaagactttaagtgcacttgtttacttggttttgaagcaaaaatttccacgtgattggtat |
36369164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 9 - 291
Target Start/End: Original strand, 36425652 - 36425934
Alignment:
| Q |
9 |
taacgtttcctttgtggaagatgaaaactccgtagcaatctcatataacatgtttgataagtctgtcatcgctaggaaagttgttaatcaatctggtttc |
108 |
Q |
| |
|
||||||||| || || |||||||| |||| |||||| ||||||||||||||||| |||||| |||||| ||||| ||| ||| | |||||||||||| |
|
|
| T |
36425652 |
taacgtttctttcgttgaagatgacaactatgtagcactctcatataacatgtttaataagtatgtcattactagggtagtggttcagcaatctggtttc |
36425751 |
T |
|
| Q |
109 |
tttcaaatattcacgtgggggaatgaaaagaatcaatggaaccggttctattcagaaccaacagaccaatgtgataactatggaacatgtggatcaaaca |
208 |
Q |
| |
|
||||||| ||||||||||| | | |||||| ||||||| ||||| || || ||||||||||||||||||| |||||| ||||||||||||||||| | |
|
|
| T |
36425752 |
tttcaaacattcacgtgggacagtcaaaagagccaatggagccggtactggtctgaaccaacagaccaatgtgctaactacggaacatgtggatcaaata |
36425851 |
T |
|
| Q |
209 |
gtaattgtgacccttttaactttgacgactttaagtgcacttgtttacttggttttgaaccaaaatttccacgtgattggtat |
291 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
36425852 |
gtaattgtgaccctttgaactttgagaactttaagtgtacttgtttacttggtttcgaaccaaaatttccacgagattggtat |
36425934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 25 - 291
Target Start/End: Original strand, 36411502 - 36411768
Alignment:
| Q |
25 |
gaagatgaaaactccgtagcaatctcatataacatgtttgataagtctgtcatcgctaggaaagttgttaatcaatctggtttctttcaaatattcacgt |
124 |
Q |
| |
|
|||||||| |||| ||| || ||||||||||||||||| ||||||||||||| | |||| ||| ||| | ||||||||||||||||||| ||||| || |
|
|
| T |
36411502 |
gaagatgacaactatgtatcactctcatataacatgtttaataagtctgtcattacaaggatagtggttcagcaatctggtttctttcaaacattcatgt |
36411601 |
T |
|
| Q |
125 |
gggggaatgaaaagaatcaatggaaccggttctattcagaaccaacagaccaatgtgataactatggaacatgtggatcaaacagtaattgtgacccttt |
224 |
Q |
| |
|
||| | | || ||| |||||||| ||||| || || ||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
36411602 |
gggacagtcaagagagtcaatggagccggtactggtctgaaccaacagaccaatgtgctaactacggaacatgtggaccaaacagtaattgtgacccttt |
36411701 |
T |
|
| Q |
225 |
taactttgacgactttaagtgcacttgtttacttggttttgaaccaaaatttccacgtgattggtat |
291 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36411702 |
gaactttgagagctttaagtgtacttgtttacttggttttgaaccaaaatttccacgtgattggtat |
36411768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 25 - 291
Target Start/End: Original strand, 36416833 - 36417099
Alignment:
| Q |
25 |
gaagatgaaaactccgtagcaatctcatataacatgtttgataagtctgtcatcgctaggaaagttgttaatcaatctggtttctttcaaatattcacgt |
124 |
Q |
| |
|
|||||||| |||| ||| || ||||||||||||||||| ||||||||||||| | |||| ||| ||| | ||||||||||||||||||| ||||| || |
|
|
| T |
36416833 |
gaagatgacaactatgtatcactctcatataacatgtttaataagtctgtcattacaaggatagtggttcagcaatctggtttctttcaaacattcatgt |
36416932 |
T |
|
| Q |
125 |
gggggaatgaaaagaatcaatggaaccggttctattcagaaccaacagaccaatgtgataactatggaacatgtggatcaaacagtaattgtgacccttt |
224 |
Q |
| |
|
||| | | || ||| |||||||| ||||| || || ||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
36416933 |
gggacagtcaagagagtcaatggagccggtactggtctgaaccaacagaccaatgtgctaactacggaacatgtggaccaaacagtaattgtgacccttt |
36417032 |
T |
|
| Q |
225 |
taactttgacgactttaagtgcacttgtttacttggttttgaaccaaaatttccacgtgattggtat |
291 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36417033 |
gaactttgagagctttaagtgtacttgtttacttggttttgaaccaaaatttccacgtgattggtat |
36417099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 4 - 291
Target Start/End: Original strand, 36433504 - 36433791
Alignment:
| Q |
4 |
acttttaacgtttcctttgtggaagatgaaaactccgtagcaatctcatataacatgtttgataagtctgtcatcgctaggaaagttgttaatcaatctg |
103 |
Q |
| |
|
||||||||| |||| ||||| ||||||| ||| |||||| || | ||||||||| |||||||||||||| | |||||| || ||| | ||||||| |
|
|
| T |
36433504 |
acttttaacatttcttttgttcaagatgacaacaatgtagcactcacgtataacatggttgataagtctgtcgttactaggatggtggttcagcaatctg |
36433603 |
T |
|
| Q |
104 |
gtttctttcaaatattcacgtgggggaatgaaaagaatcaatggaaccggttctattcagaaccaacagaccaatgtgataactatggaacatgtggatc |
203 |
Q |
| |
|
|||||||||||||||| | ||||| ||| |||| | ||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
36433604 |
gtttctttcaaatattaatgtgggacaataaaaaaagtcaatggaaccagttctattcacaaccaacaaaccaatgtgataactatggaacatgtggatc |
36433703 |
T |
|
| Q |
204 |
aaacagtaattgtgacccttttaactttgacgactttaagtgcacttgtttacttggttttgaaccaaaatttccacgtgattggtat |
291 |
Q |
| |
|
||||||||||||||||||| | ||||||| ||||| || || ||||||||| |||||||||||| |||| |||| | ||||||||| |
|
|
| T |
36433704 |
aaacagtaattgtgaccctatgaactttgcggacttcaaatgtgcttgtttacctggttttgaacccaaatctccaggcgattggtat |
36433791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 40 - 291
Target Start/End: Original strand, 36387490 - 36387741
Alignment:
| Q |
40 |
gtagcaatctcatataacatgtttgataagtctgtcatcgctaggaaagttgttaatcaatctggtttctttcaaatattcacgtgggggaatgaaaaga |
139 |
Q |
| |
|
|||||| |||||||||||||||| | |||||||||||| ||||| ||| || | |||||||||||| |||||| ||||| ||||| | | ||| | |
|
|
| T |
36387490 |
gtagcattctcatataacatgttcgctaagtctgtcataactagggtagtgattcagcaatctggtttccttcaaacattcaggtgggacagtcaaacgg |
36387589 |
T |
|
| Q |
140 |
atcaatggaaccggttctattcagaaccaacagaccaatgtgataactatggaacatgtggatcaaacagtaattgtgacccttttaactttgacgactt |
239 |
Q |
| |
|
||||||| ||||| || || |||||| | ||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
36387590 |
gccaatggagccggtgctggtctgaaccatctgacgaatgtggtaactatggaacatgtggatcaaatggtaattgtgacccttttaactttgatgactt |
36387689 |
T |
|
| Q |
240 |
taagtgcacttgtttacttggttttgaaccaaaatttccacgtgattggtat |
291 |
Q |
| |
|
|||||| ||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
36387690 |
taagtgttcttgtttacttggttatgaacccaaatttccacgtgattggtat |
36387741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University