View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12911_low_1 (Length: 765)
Name: NF12911_low_1
Description: NF12911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12911_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 632; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 13 - 750
Target Start/End: Complemental strand, 31544230 - 31543487
Alignment:
| Q |
13 |
aatatacaaaatttagtacactgttagtgaccaaataagcatgaaaacattgccccaacaatcagttttgtactatttttccatcctcatcattgtca-- |
110 |
Q |
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| T |
31544230 |
aatatacaaaatttagtgcactgttagtgactaaataagcatgaaaacattgccccaacaatcagttttgtactatttttccatcctcatcattgtaacg |
31544131 |
T |
|
| Q |
111 |
-ttcc---aacttatggagagaaagatgcagattacatgtcccaacttatgaaagcactgaccccaactcccaaaggctggtctagcaacattcactact |
206 |
Q |
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| T |
31544130 |
gttactataactaatggagagaaagatgcagattacatgtcccaacttatgaaagcactgaccccaactcccaaaggctggtctggcaacattcactact |
31544031 |
T |
|
| Q |
207 |
gcaaatggaacggcatcacgtgcgaccaatctaatcaagttgtcactgccatcaagcttccatcaagttcactcacagggacaatccctcagaatttcaa |
306 |
Q |
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| T |
31544030 |
gcaaatggaatggcatcaggtgtgaccaatctaatcaagttgtcaccgccatcaagcttccatcaagttctctcacagggataatccctgagaatttcaa |
31543931 |
T |
|
| Q |
307 |
ctcactcaataatctcaccgacatcgatcttcataacaactcactgaacggtccttcgcctgatttggctttcctaaacatgctccaaaccgtgaacctt |
406 |
Q |
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| T |
31543930 |
ctctctcaataatctcacggacatcgatcttcataacaactcactcaacggtcctttgcctgatttggctttcctaaacgtgctccaaaccgtgaacctt |
31543831 |
T |
|
| Q |
407 |
ggttacaataacttcacttcaatcccagacttttgctttggaaccctactagatctaacaaccctcaaccttagcaataacttgaatctcaagccatggt |
506 |
Q |
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| T |
31543830 |
ggttacaataactttacttcaatcccagatttttgctttggaaccctactagatctaacaaccctcaaccttagcaataacttgaatctcaagccatggt |
31543731 |
T |
|
| Q |
507 |
tatttcctgaagaattatccgtgtcctcgttgatacataccctcgatctcgaagcaacaaatctcatagcttcattaccatcagatatgttcaaatggtt |
606 |
Q |
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| T |
31543730 |
tatttcctgaagaattatccgtgtcctcgttgatacataccctcgatctcgaagcaacaaatctcatagcttcattaccatcagatatgttcaaatggtt |
31543631 |
T |
|
| Q |
607 |
tccgcgtttgcatactgtttttctttctcacaacaacttaagtggaactcttcccccttctcttggggaatcttcaataaggtatttgcgactcaataac |
706 |
Q |
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| T |
31543630 |
tccgcgtttgcatactgtttttctttctcacaacaacttaagtggaactcttcccccttctcttggggaatcttcaataaggtatttgcgactcaataac |
31543531 |
T |
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| Q |
707 |
caaggggcgtttagtgggtttatcggtacaattgatgttatatc |
750 |
Q |
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| T |
31543530 |
caaggggcgtttagtgggtttaccggtacaattgatgttatatc |
31543487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 470 - 702
Target Start/End: Original strand, 31550873 - 31551111
Alignment:
| Q |
470 |
ctcaaccttagcaataacttgaatctcaagccatggttatttcctga-----agaattatccgtgtcctc-gttgatacataccctcgatctcgaagcaa |
563 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| || ||| | | || |||||| || ||||| ||||| ||||| | |
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| T |
31550873 |
ctcaaccttagtaataacttgaatctcaagccatggttatttcctgaggctgaggatttaggttattctgagttgatgcacacccttgatcttgaagcta |
31550972 |
T |
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| Q |
564 |
caaatctcatagcttcattaccatcagatatgttcaaatggtttccgcgtttgcatactgtttttctttctcacaacaacttaagtggaactcttccccc |
663 |
Q |
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||||| || ||| | |||| |||||||| ||||| | |||||||| | ||||||||||||| ||| |||||||||||| | ||||||| ||||||| |
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| T |
31550973 |
caaatatcttaggtccattgccatcagacgtgttcgattggtttccaagattgcatactgtttctctctctcacaacaacatccgtggaacacttcccct |
31551072 |
T |
|
| Q |
664 |
ttctcttggggaatcttcaataaggtatttgcgactcaa |
702 |
Q |
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| T |
31551073 |
gtctcttggaaaatctgtagtaaggtatttacgactcaa |
31551111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 31535449 - 31535365
Alignment:
| Q |
138 |
attacatgtcccaacttatgaaagcactgaccccaactcccaaaggctggtctagcaacattcactactgcaaatggaacggcat |
222 |
Q |
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| T |
31535449 |
attacatgtccaaacttttgaaagcactaaccccaactccctctaactggtctaacaacactcactactgcagatggaacggcat |
31535365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 256 - 373
Target Start/End: Complemental strand, 31535334 - 31535217
Alignment:
| Q |
256 |
catcaagcttccatcaagttcactcacagggacaatccctcagaatttcaactcactcaataatctcaccgacatcgatcttcataacaactcactgaac |
355 |
Q |
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||||| ||||||||||||||||||||| || ||| ||||| || ||||||| ||| | |||| ||| ||||||| || || ||||||||||| | | |
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| T |
31535334 |
catcacgcttccatcaagttcactcactggtacactcccttccaacctcaactctctctcttatctaacccacatcgacctccacaacaactcactcacc |
31535235 |
T |
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| Q |
356 |
ggtccttcgcctgatttg |
373 |
Q |
| |
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||| ||| |||||||||| |
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| T |
31535234 |
ggtactttgcctgatttg |
31535217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 31550579 - 31550656
Alignment:
| Q |
138 |
attacatgtcccaacttatgaaagcactgaccccaactcccaaaggctggtctagcaacattcactactgcaaatgga |
215 |
Q |
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|||| |||||||||||| |||||||| ||||||||||||| |||||||||| ||||| ||| ||||||| |||| |
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| T |
31550579 |
attatatgtcccaacttttgaaagcattgaccccaactccttctggctggtctaacaacactcatcactgcaattgga |
31550656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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