View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12911_low_11 (Length: 267)
Name: NF12911_low_11
Description: NF12911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12911_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 36404185 - 36403929
Alignment:
| Q |
1 |
caaaggaaacgttaaaagtttccatatctcgtttcatattaggtacacctgcaaacagttctccattccaatgtccagcacgccaccatggaaggttatg |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36404185 |
caaaagaaacgttaaaagtttccatatctcgtttcatattaggtacacctgcaaacagttctccattccaatgtccagcacgccaccatggaaggttatg |
36404086 |
T |
|
| Q |
101 |
gttgtacataaacaactgaggtttaccaatggtgctgaattccaccgtgaacgcaccttttccagggtcatcatctgtcttccaggattgaaggaaccag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36404085 |
gttgtacataaacaactgaggtttaccaatggtgctgaattccaccgtgaacgcaccttttccagggtcatcatctgtcttccaggattgaaggaaccag |
36403986 |
T |
|
| Q |
201 |
ctttgattagtttttctattaaaccctatctttagatatggaagcaaggtgtctgtg |
257 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36403985 |
ctttgattagtttttctattaaaccctatctttagatatggaagcaaggtgtctgtg |
36403929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 256
Target Start/End: Complemental strand, 36373489 - 36373255
Alignment:
| Q |
22 |
ccatatctcgtttcatattaggtacacctgcaaacagttctccattccaatgtccagcacgccaccatggaaggttatggttgtacataaacaactgagg |
121 |
Q |
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||||||||||||||||||||||| ||||| | || | | |||| |||||||||||| ||||||||||||||| | |||||||||||||||||||||||| |
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| T |
36373489 |
ccatatctcgtttcatattaggtgcacctactaagattgctccgttccaatgtccaccacgccaccatggaaaatcatggttgtacataaacaactgagg |
36373390 |
T |
|
| Q |
122 |
tttaccaatggtgctgaattccaccgtgaacgcaccttttccagggtcatcatctgtcttccaggattgaaggaaccagctttgattagtttttctatta |
221 |
Q |
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||| ||||| || |||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36373389 |
tttgacaatgctgttgaatttcactgtgaatgcaccatttccagggtcatcatctgtcttccaggattgaaggaaccagctttgattagtttttctatta |
36373290 |
T |
|
| Q |
222 |
aaccctatctttagatatggaagcaaggtgtctgt |
256 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| |
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| T |
36373289 |
aacccaatctttagatatggaagcaaggtgtctgt |
36373255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 36397241 - 36396996
Alignment:
| Q |
12 |
ttaaaagtttccatatctcgtttcatattaggtacacctgcaaacagttctccattccaatgtccagcacgccaccatggaaggttatggttgtacataa |
111 |
Q |
| |
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|||||||||| || |||||||||||||||||||| |||| |||| ||| |||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36397241 |
ttaaaagtttgcaaatctcgtttcatattaggtatacctacaaatagtgctccgttccaatgtccaccacgccaccatggaaggttatggttgtacataa |
36397142 |
T |
|
| Q |
112 |
acaactgaggtttaccaatggtgctgaattccaccgtgaacgcaccttttccagggtcatcatctgtcttccaggattgaaggaaccagctttgattagt |
211 |
Q |
| |
|
||||||||||| |||| ||| ||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| |
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| T |
36397141 |
acaactgaggtatacctatgctgctgaatttcaccgtgaatgcaccttttccagggtcatcttctgtcttccaggattgaaggggccaactttgattagt |
36397042 |
T |
|
| Q |
212 |
ttttctattaaaccctatctttagatatggaagcaaggtgtctgtg |
257 |
Q |
| |
|
|||||||| ||| || | | || |||||||||| |||||||||||| |
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|
| T |
36397041 |
ttttctatcaaaaccaaacctttgatatggaaggaaggtgtctgtg |
36396996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 6 - 256
Target Start/End: Complemental strand, 36368889 - 36368639
Alignment:
| Q |
6 |
gaaacgttaaaagtttccatatctcgtttcatattaggtacacctgcaaacagttctccattccaatgtccagcacgccaccatggaaggttatggttgt |
105 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| |||| |||| | |||||| ||||| |||||| |||||||||| ||||| | |||||||| |
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|
| T |
36368889 |
gaaacattaaaagtggtcatatctcgtttcatattaggtatacctacaaataattctccgttccagtgtccaccacgccaccaaggaagatcatggttgt |
36368790 |
T |
|
| Q |
106 |
acataaacaactgaggtttaccaatggtgctgaattccaccgtgaacgcaccttttccagggtcatcatctgtcttccaggattgaaggaaccagctttg |
205 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||| || ||||| || ||||||||||||||||||||||||||||| ||||| || ||||||||||| |
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| T |
36368789 |
acataaacaactgaggttttccaatgctgctgaatttcaatgtgaatgcgccttttccagggtcatcatctgtcttccatgattggagaaaccagctttg |
36368690 |
T |
|
| Q |
206 |
attagtttttctattaaaccctatctttagatatggaagcaaggtgtctgt |
256 |
Q |
| |
|
|||||||||||||| ||| || | ||| ||||||||||||||||| ||||| |
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| T |
36368689 |
attagtttttctatcaaaaccaaccttgagatatggaagcaaggtatctgt |
36368639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 61 - 257
Target Start/End: Complemental strand, 36411439 - 36411243
Alignment:
| Q |
61 |
ctccattccaatgtccagcacgccaccatggaaggttatggttgtacataaacaactgaggtttaccaatggtgctgaattccaccgtgaacgcaccttt |
160 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| | | |||||||||||||||||| || ||||| |||||||||||||||| |||||||||||||||||| |
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|
| T |
36411439 |
ctccattccaatgtccaccacgccaccaaggacgatcatggttgtacataaacaattgtggtttgccaatggtgctgaatttcaccgtgaacgcaccttt |
36411340 |
T |
|
| Q |
161 |
tccagggtcatcatctgtcttccaggattgaaggaaccagctttgattagtttttctattaaaccctatctttagatatggaagcaaggtgtctgtg |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||| || |||||| |||| ||||||| ||||||||| |
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|
| T |
36411339 |
tccagggtcatcatctgtcttccaggattgaaggacccaactttgattaatttttctatcaaaaccaatcttttgatacggaagcattgtgtctgtg |
36411243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 61 - 257
Target Start/End: Complemental strand, 36416770 - 36416574
Alignment:
| Q |
61 |
ctccattccaatgtccagcacgccaccatggaaggttatggttgtacataaacaactgaggtttaccaatggtgctgaattccaccgtgaacgcaccttt |
160 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| | | |||||||||||||||||| || ||||| |||||||||||||||| |||||||||||||||||| |
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|
| T |
36416770 |
ctccattccaatgtccaccacgccaccaaggacgatcatggttgtacataaacaattgtggtttgccaatggtgctgaatttcaccgtgaacgcaccttt |
36416671 |
T |
|
| Q |
161 |
tccagggtcatcatctgtcttccaggattgaaggaaccagctttgattagtttttctattaaaccctatctttagatatggaagcaaggtgtctgtg |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||| || |||||| |||| ||||||| ||||||||| |
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|
| T |
36416670 |
tccagggtcatcatctgtcttccaggattgaaggacccaactttgattaatttttctatcaaaaccaatcttttgatacggaagcattgtgtctgtg |
36416574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 36433522 - 36433278
Alignment:
| Q |
1 |
caaaggaaacgttaaaagtttccatatctcgtttcatattaggtacacctgcaaacagttctccattccaatgtccagcacgccaccatggaaggttatg |
100 |
Q |
| |
|
|||| |||| ||||||||| ||| ||| ||||||| |||||| ||||||| || ||| ||||||||||| || || |||||||||| ||||||||||| |
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|
| T |
36433522 |
caaaagaaatgttaaaagtgtccctatttcgtttcgcattaggcacacctgataatagtgctccattccaaggttcaccacgccaccagggaaggttatg |
36433423 |
T |
|
| Q |
101 |
gttgtacataaacaactgaggtttaccaatggtgctgaattccaccgtgaacgcaccttttccagggtcatcatctgtcttccaggattgaaggaaccag |
200 |
Q |
| |
|
||||||||||| | ||||| |||||||| ||||||||||| || |||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
36433422 |
tttgtacataaaaagctgagttttaccaacggtgctgaatttcaacgtgaaggcaccttttccagggtcatcctctgtcttccaggattgaaggaaccag |
36433323 |
T |
|
| Q |
201 |
ctttgattagtttttctattaaaccctatctttagatatggaagc |
245 |
Q |
| |
|
||||||||||||||||||| ||| || | | || ||||||||||| |
|
|
| T |
36433322 |
ctttgattagtttttctatcaaaaccaagcctttgatatggaagc |
36433278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 22 - 256
Target Start/End: Complemental strand, 36387448 - 36387213
Alignment:
| Q |
22 |
ccatatctcgtttcatattaggtacacctgcaaacagttctccattccaatgtccagcacgccaccatggaaggttatggttgtacataaacaactgagg |
121 |
Q |
| |
|
|||||||||||||||||| |||| ||||| || | |||| |||||||||||| | |||||||| ||||| | |||||||||||| |||| ||||| |
|
|
| T |
36387448 |
ccatatctcgtttcatatcaggtgcacctattaaggttgctccgttccaatgtccaccgcgccaccaaggaagatcatggttgtacattaacacttgagg |
36387349 |
T |
|
| Q |
122 |
tttaccaatggtgctgaattccaccgtgaacgcaccttttccagggtcatcatctgtcttccaggattgaaggaaccagctttgattagt-ttttctatt |
220 |
Q |
| |
|
||| |||||||||||||||| ||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
36387348 |
tttgccaatggtgctgaatttcactgtgaatgcaccatttccagggtcatcatccgtcttccaggattgaaggaaccagctttgattagttttttttatc |
36387249 |
T |
|
| Q |
221 |
aaaccctatctttagatatggaagcaaggtgtctgt |
256 |
Q |
| |
|
||| || | | ||||||||||||||||||||||||| |
|
|
| T |
36387248 |
aaaaccaagccttagatatggaagcaaggtgtctgt |
36387213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 22 - 257
Target Start/End: Complemental strand, 36425644 - 36425409
Alignment:
| Q |
22 |
ccatatctcgtttcatattaggtacacctgcaaacagttctccattccaatgtccagcacgccaccatggaaggttatggttgtacataaacaactgagg |
121 |
Q |
| |
|
|||||||||||||||||||||||| |||| | || | |||||| |||||||||||| ||||||| | ||| | | ||||||||||||||||||| || |
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|
| T |
36425644 |
ccatatctcgtttcatattaggtagacctactaatatttctccgttccaatgtccaccacgccagaaacgaacatcacggttgtacataaacaactgcgg |
36425545 |
T |
|
| Q |
122 |
tttaccaatggtgctgaattccaccgtgaacgcaccttttccagggtcatcatctgtcttccaggattgaaggaaccagctttgattagtttttctatta |
221 |
Q |
| |
|
||| ||||| |||||||||| ||| |||||||||||||||||||||||||| || |||||||| |||||||||||||| ||||||||| ||||||||| | |
|
|
| T |
36425544 |
tttgccaattgtgctgaatttcacggtgaacgcaccttttccagggtcatcgtcggtcttccatgattgaaggaaccaactttgattaatttttctatca |
36425445 |
T |
|
| Q |
222 |
aaccctatctttagatatggaagcaaggtgtctgtg |
257 |
Q |
| |
|
|| || | ||||| ||||||||||| ||||||||| |
|
|
| T |
36425444 |
aaaccaagctttatatatggaagcattgtgtctgtg |
36425409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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