View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12911_low_8 (Length: 410)
Name: NF12911_low_8
Description: NF12911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12911_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 10 - 393
Target Start/End: Original strand, 8176698 - 8177081
Alignment:
| Q |
10 |
catcatcaccaacacaacccatcttctcaattcacttcgaaaacagtttttgatgaaaattgcaaacaattaaagcgcaatgttgttcctatggagaata |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
8176698 |
catcatcaccaacacaacccatcttctcaattcacttcaaaaacagtttttgatgaaaattgcaaacaattaaagcgcaatgttcttcctacggagaata |
8176797 |
T |
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| Q |
110 |
aagctttcaactttttcaacccactaacaaatttcttcaaaaataagcaactgggtcatggaatttcttgcggaattcatcaaaaatgttattatggttc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8176798 |
aagctttcaactttttcaacccactaacaaatttcttcaaaaataagcaactgggtcatggaatttcttgcggaattcttcaaaaatgttattatggttc |
8176897 |
T |
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| Q |
210 |
aatgggtggtgctgttcaaagaagttccagattctcagagttgaatgatgatgatgttagatactttgaggagattttggggaagaaaaatgttgtacag |
309 |
Q |
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| T |
8176898 |
aatgggtggtgctgttcaaagaagttccagattctcagagttgaatgatgatgatgttagatactttgaggagattttggggaagaaaaatgttgtacag |
8176997 |
T |
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| Q |
310 |
gatgaagataagcttagtgttgcaaatattgattggttgcataaatacaaaggctcaagcaaactcattctacaaccatgtaac |
393 |
Q |
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| T |
8176998 |
gatgaagataagcttagtgttgcaaatattgattggatgcataaatacaaaggctcaagcaaactcattctacaaccatgtaac |
8177081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 45512172 - 45512114
Alignment:
| Q |
10 |
catcatcaccaacacaacccatcttctcaattcacttcgaaaacagtttttgatgaaaa |
68 |
Q |
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| T |
45512172 |
catcatcagcaacacaacccatcttctcaattcacttcaaaaacagtttttgatgaaaa |
45512114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 344
Target Start/End: Complemental strand, 45511491 - 45511449
Alignment:
| Q |
302 |
ttgtacaggatgaagataagcttagtgttgcaaatattgattg |
344 |
Q |
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| T |
45511491 |
ttgtacaggatgaagataagcttaatgctgctaatattgattg |
45511449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 32133959 - 32134015
Alignment:
| Q |
10 |
catcatcaccaacacaacccatcttctcaattcacttcgaaaacagtttttgatgaa |
66 |
Q |
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| T |
32133959 |
catcatcagcaacatagcccatcttctcaattcacttcaaaaacagtttttgatgaa |
32134015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 32134634 - 32134684
Alignment:
| Q |
302 |
ttgtacaggatgaagataagcttagtgttgcaaatattgattggttgcata |
352 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||||| |||||| |
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| T |
32134634 |
ttgtacaggatgaagataagcttagtggtgctaatattgattggatgcata |
32134684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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