View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12911_low_9 (Length: 335)

Name: NF12911_low_9
Description: NF12911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12911_low_9
NF12911_low_9
[»] chr8 (2 HSPs)
chr8 (1-320)||(38624948-38625265)
chr8 (1-306)||(38650014-38650314)


Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 38625265 - 38624948
Alignment:
Q  1 taaagaaagagaatagaaagcttacaggaataaaatcagcagggttttctttgatggacggaatctcatatattgccttatagcagcggcaaatttcaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38625265 taaagaaagagaatagaaagcttacaggaataaaatcagcagggttttctttgatggacggaatctcatatattgccttatagcagcggcaaatttcaag 38625166  T
Q  101 ataatcattgttgtgggaataataccttacatgacagacaaaaaaccaaaataagnnnnnnnnnnngtttcaggatcagccgtaagaaatatcatgaacc 200  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||           |||||||||||||| |||||||||||||||||||    
T  38625165 ataatcattgttgtgggaataataccttacatcacagacaaaaaaccaaaataag--aaaaaaaaagtttcaggatcagctgtaagaaatatcatgaacc 38625068  T
Q  201 ccgtacttgaaaaatatgcagcatgaagataaaataaacatgcactcatctatatggatttcacattcaatgaagtggtatagaagcatcgacccaagtt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38625067 ccgtacttgaaaaatatgcagcatgaagataaaataaacatgcactcatctatatggatttcacattcaatgaagtggtatagaagcatcgacccaagtt 38624968  T
Q  301 tagaaaactatggggaattt 320  Q
    ||||||||||||||||||||    
T  38624967 tagaaaactatggggaattt 38624948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 38650314 - 38650014
Alignment:
Q  1 taaagaaagagaatagaaagcttacaggaataaaatcagcagggttttctttgatggacggaatctcatatattgccttatagcagcggcaaatttcaag 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38650314 taaagaaagagaatagaaagctgacaggaataaaatcagcagggttttctttgatggacggaatctcatatattgccttatagcagcggcaaatttcaag 38650215  T
Q  101 ataatcattgttgtgggaataataccttacatgacagacaaaaaaccaaaataagnnnnnnnnnnngtttcaggatcagccgtaagaaatatcatgaacc 200  Q
    ||||||||||||||||||||||||||| | ||  |||||| |||| ||  |||||           |  ||||||||||| |||||||||||||||||||    
T  38650214 ataatcattgttgtgggaataatacctaaaat--cagacagaaaa-cagcataaggaaaaaaaaaag--tcaggatcagcagtaagaaatatcatgaacc 38650120  T
Q  201 ccgtacttgaaaaatatgcagcatgaagataaaataaacatgcactcatctatatggatttcacattcaatgaagtggtatagaagcatcgacccaagtt 300  Q
     |  ||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| |||||||||    
T  38650119 acaaactagaaaaatatgtagcatgaagataaaataaacatgcactcatctatatcgatttcacagtcagtgaagtggtatagaagcatcaacccaagtt 38650020  T
Q  301 tagaaa 306  Q
    ||||||    
T  38650019 tagaaa 38650014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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