View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12912_high_2 (Length: 546)
Name: NF12912_high_2
Description: NF12912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12912_high_2 |
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| [»] scaffold0206 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 9 - 461
Target Start/End: Complemental strand, 3522642 - 3522191
Alignment:
| Q |
9 |
acatcatcaattaaggattcttgtgatatggaattgattgattgtgagagcttcagatatctatattggtgcttcaacaattgttgtaaagaataaatca |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3522642 |
acatcatcaattaaggattcttgtgatatggaattgattgattgtgagagcttcagatatctatattggtgcttcaacaattgttgtaaagaataaatca |
3522543 |
T |
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| Q |
109 |
tttcatcttaatcgtgtgacatcttaatctgaatatcaatcatgatttggttgaactttagcgaagaaatgacatgttcaaataactacgttatcatgtt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| |
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| T |
3522542 |
tttcatcttaatcgtgtgacatcttaatctgaatatcaatcatgatttggttgaactttagccaagaaatgacatgttcaaataactacgttattaagtt |
3522443 |
T |
|
| Q |
209 |
ggcttcaaatttattgctcaactaacaaataatatggtatgtatggagcaggtttgttagatatcaatatcaaaattctgaaacagttgatattttatct |
308 |
Q |
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|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| ||||| |||||||||||||||| |||||||||| |
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| T |
3522442 |
ggcttcaaatttattgatcaactaacaaataatatggtacgtatggagcaggtttgtcagatataaatataaaaattctgaaacagt---tattttatct |
3522346 |
T |
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| Q |
309 |
gcggtgattgcaccggtttttgagtgtagtgaattctgatcc--ttttttatatacatattagaattttgtcatatactctctgttttggaatcaatata |
406 |
Q |
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| T |
3522345 |
gcggtgattgcaccagtatttaagtgtagtgaattctgatccttttttttatatacatattagaattttgtcatatactctgtgttttggaatcaatata |
3522246 |
T |
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| Q |
407 |
gctttattcaacatcaagatgtgcagattgaatagttaaatttggggctgctaat |
461 |
Q |
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| T |
3522245 |
gctttattcaacatcaatatgtgcagattgattagttaaatttggggctgctaat |
3522191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 3537333 - 3537554
Alignment:
| Q |
9 |
acatcatcaattaaggattcttgtgatatggaattgattgattgtgagagcttcagatatctatattggtgcttcaacaattgttgtaaagaataaatca |
108 |
Q |
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| T |
3537333 |
acatcatcaattagtgactcttttgatgtggatttgac-gattgtgagagcgtcagatat----attgttgcttcaatgattgttgtaaagaataagtga |
3537427 |
T |
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| Q |
109 |
tttcatcttaatcgtgtgacatcttaatctgaatatcaatcatgatttggttgaactttagcgaagaaatgacatgttcaaata-actacgttatcatgt |
207 |
Q |
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| T |
3537428 |
gttcatcttaatcgtgtaacatcttattctgattatcaatcgagatttgttttgactttacccaagaaattatctggtgaaatagttttcgttattatgt |
3537527 |
T |
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| Q |
208 |
tggcttcaaa-tttattgctcaactaa |
233 |
Q |
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| T |
3537528 |
tgccttcaaattttattgctcaactaa |
3537554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 166 - 264
Target Start/End: Complemental strand, 30837034 - 30836936
Alignment:
| Q |
166 |
ttagcgaagaaatgacatgttcaaataactacgttatcatgttggcttcaaatttattgctcaactaacaaataatatggtatgtatggagcaggtttg |
264 |
Q |
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||||| ||||||||||||||| |||||||| ||||| | |||| |||||||||||||||||| |||| ||||| ||||| |||||||| |||||||| |
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| T |
30837034 |
ttagccaagaaatgacatgttaaaataacttcgttactacgttgccttcaaatttattgctcagctaataaatagtatgggttgtatggaacaggtttg |
30836936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 3479146 - 3479079
Alignment:
| Q |
54 |
gagagcttcagatatctatattggtgcttcaacaattgttgtaaagaataaatcatttcatcttaatc |
121 |
Q |
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|||| |||||||||||||||||||||||||| |||||||| |||| ||||| || |||||||||||| |
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| T |
3479146 |
gagaacttcagatatctatattggtgcttcagcaattgttataaaaaataagtcgcttcatcttaatc |
3479079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 17912322 - 17912413
Alignment:
| Q |
173 |
agaaatgacatgttcaaataactacgttatcatgttggcttcaaatttattgctcaactaacaaataatatggtatgtatggagcaggtttg |
264 |
Q |
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|||||||||||||| |||||||| ||||| | |||| ||||||||||||||||| |||| |||| ||||| |||||||| |||||||| |
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| T |
17912322 |
agaaatgacatgttaaaataacttcgttactacgttgccttcaaatttattgctcggctaatcaatagtatgggttgtatggaacaggtttg |
17912413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 264
Target Start/End: Complemental strand, 43978003 - 43977905
Alignment:
| Q |
166 |
ttagcgaagaaatgacatgttcaaataactacgttatcatgttggcttcaaatttattgctcaactaacaaataatatggtatgtatggagcaggtttg |
264 |
Q |
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||||| ||||||||||| ||| |||| ||| ||||| |||| |||||||||||||||||| |||| ||||| ||||| |||||||| | |||||| |
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| T |
43978003 |
ttagccaagaaatgacaggttaaaattacttcgttactgcgttgccttcaaatttattgctcagctaataaatagtatgggttgtatggaactggtttg |
43977905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0206 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0206
Description:
Target: scaffold0206; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 29877 - 29826
Alignment:
| Q |
70 |
tatattggtgcttcaacaattgttgtaaagaataaatcatttcatcttaatc |
121 |
Q |
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||||||||||||||| |||||||| |||| ||||| ||| |||||||||||| |
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| T |
29877 |
tatattggtgcttcagcaattgttataaaaaataagtcacttcatcttaatc |
29826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 264
Target Start/End: Complemental strand, 4997714 - 4997616
Alignment:
| Q |
166 |
ttagcgaagaaatgacatgttcaaataactacgttatcatgttggcttcaaatttattgctcaactaacaaataatatggtatgtatggagcaggtttg |
264 |
Q |
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||||| ||||||||||| ||| |||| ||| ||||| |||| |||||||||||||||||| |||| ||||| ||||| |||||||| | |||||| |
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| T |
4997714 |
ttagccaagaaatgacaggttaaaattacttcgttactgcgttgccttcaaatttattgctcagctaataaatagtatgggttgtatggaactggtttg |
4997616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 255
Target Start/End: Original strand, 35200426 - 35200515
Alignment:
| Q |
166 |
ttagcgaagaaatgacatgttcaaataactacgttatcatgttggcttcaaatttattgctcaactaacaaataatatggtatgtatgga |
255 |
Q |
| |
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||||| ||||||||||| ||| |||| ||| ||||| |||| |||||||||||||||||| |||| ||||| ||||| |||||||| |
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| T |
35200426 |
ttagccaagaaatgacaggttaaaattacttcgttactgcgttgccttcaaatttattgctcagctaataaatagtatgggttgtatgga |
35200515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 264
Target Start/End: Complemental strand, 3349897 - 3349799
Alignment:
| Q |
166 |
ttagcgaagaaatgacatgttcaaataactacgttatcatgttggcttcaaatttattgctcaactaacaaataatatggtatgtatggagcaggtttg |
264 |
Q |
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||||| ||||||||||| ||| |||| ||| ||||| |||| |||||||||||||||||| |||| ||||| ||||| |||||||| | |||||| |
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| T |
3349897 |
ttagccaagaaatgacaggttaaaattacttcgttactgcgttgccttcaaatttattgctcagctaataaatagtatgggttgtatggaactggtttg |
3349799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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