View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12912_low_3 (Length: 448)
Name: NF12912_low_3
Description: NF12912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12912_low_3 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 104 - 448
Target Start/End: Complemental strand, 32724718 - 32724382
Alignment:
| Q |
104 |
cttctatgtctatctctctctttccgatggatggtttcccgatttccgccatggtagtcgcgttattgcacggaagtggtagttgcactatttctggaat |
203 |
Q |
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| T |
32724718 |
cttctttgtctatctctctctttccgatggatgatttcccgatttccgccatggtagtcgtgttattgcacggaagtggaagtcgaactatttctgaaat |
32724619 |
T |
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| Q |
204 |
taattttaaaaaacagatagaaggaatgaacgtagtggtgaaagtaaatgttatattatgaatattattcatgaatgaattttgaaagagaaagatatta |
303 |
Q |
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| T |
32724618 |
taa-tttaaaaaacagatagaaggaatgaacgtagtggtgaaagtaaatgttgtatcatgaatattattcatgaaagaattttgaaaga-aacgatatta |
32724521 |
T |
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| Q |
304 |
aaattaaaatttagaaacatacttggcaatgtcttctttcctcttctgtaagtgatttcacnnnnnnnnnnncaattaacctatgtttccgtcatatgac |
403 |
Q |
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| T |
32724520 |
aaattaaaatttagaaacatacttggcaatg-attttttcctcttctgtaagtgatttcac-----ttttttcaattaacttatgtttccgttagatgac |
32724427 |
T |
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| Q |
404 |
tcttgtcccttcaattagaaactgacaatgtaaaccatcaatgtt |
448 |
Q |
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| T |
32724426 |
ttttgtcccttcaattagaaattggcaatgtaaaccatcaatgtt |
32724382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 244 - 364
Target Start/End: Complemental strand, 4001937 - 4001817
Alignment:
| Q |
244 |
aaagtaaatgttatattatgaatattattcatgaatgaattttgaaagagaaagatattaaaattaaaatttagaaacatacttggcaatgtcttctttc |
343 |
Q |
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| T |
4001937 |
aaagtaaatgttgtattatgaatattattcatgaatgaattttgaaagagaaagatattaaaattaaaatttagaaacatacttggcattgtcttctttc |
4001838 |
T |
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| Q |
344 |
ctcttctgtaagtgatttcac |
364 |
Q |
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| T |
4001837 |
ctcttatgtaagtgatttcac |
4001817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 93
Target Start/End: Complemental strand, 32724781 - 32724742
Alignment:
| Q |
54 |
tactctttctctaataaacatgtaaacccatcatctctct |
93 |
Q |
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| T |
32724781 |
tactctttctctaataaacatgtaaacccataatctctct |
32724742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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