View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12912_low_4 (Length: 418)

Name: NF12912_low_4
Description: NF12912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12912_low_4
NF12912_low_4
[»] chr6 (6 HSPs)
chr6 (18-413)||(6520715-6521110)
chr6 (171-371)||(6473227-6473427)
chr6 (240-370)||(6457236-6457366)
chr6 (135-369)||(6465091-6465325)
chr6 (233-343)||(6523248-6523358)
chr6 (190-343)||(6528006-6528159)
[»] chr7 (2 HSPs)
chr7 (16-384)||(9665479-9665847)
chr7 (239-371)||(3754012-3754144)
[»] chr4 (1 HSPs)
chr4 (16-384)||(13536503-13536871)
[»] chr1 (1 HSPs)
chr1 (33-271)||(35231717-35231955)


Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 6521110 - 6520715
Alignment:
Q  18 gcttgaatttccaatgctgttagggttgatccagtagcaacaacattggcatcaccatatgctaaacctagcaatgtggctgagtaatatgcattaatag 117  Q
    ||||||||||| || || ||||||||||| | | ||||||||||||||||||||||||||||||| || ||||| || || || ||||||||||||||||    
T  6521110 gcttgaatttcgaaagcagttagggttgaccaaatagcaacaacattggcatcaccatatgctaagccaagcaaggtagcagaataatatgcattaatag 6521011  T
Q  118 cttcactgctacctttctgatatcttccattttcaaactcagctaatccaccagcccaagaatggagtttataaagatcaaaacaacgcaagcgcgtgta 217  Q
    ||||||| ||||| || |||||||||||||||||| ||||||||||||| ||||||||||||||||| || |||||||||||||| |  | |||||||||    
T  6521010 cttcactactacccttttgatatcttccattttcatactcagctaatcctccagcccaagaatggagcttgtaaagatcaaaacatcttaggcgcgtgta 6520911  T
Q  218 attcgaattcaaacttgtgctcaagttcatgaaatcttccatgagtgcataagcttgaggcttatgctttcttccccaatcgggatcaagtttagcaaga 317  Q
    ||||| ||||||||  |||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6520910 attcggattcaaacaagtgctggagttcatgaaatcttccatgagtgcataagcttgaggcttatactttcttccccaatcgggatcaagtttagcaaga 6520811  T
Q  318 acagcaataccataaaggaaatatcctaaatgattaagctgagcattataaatttccgaacctaaacaatcgttagattcatcacattcttctctg 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6520810 acagcaataccataaaggaaatatcctaaatgattaagctgagcattataaatttccgaacctaaacaatcgttagattcatcacattcttttctg 6520715  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 171 - 371
Target Start/End: Complemental strand, 6473427 - 6473227
Alignment:
Q  171 gcccaagaatggagtttataaagatcaaaacaacgcaagcgcgtgtaattcgaattcaaacttgtgctcaagttcatgaaatcttccatgagtgcataag 270  Q
    ||||||||||| ||||| |||||||||||||| |  ||  | || ||||| |||||| |  || |||||||| |||| |||||||||||||||||||| |    
T  6473427 gcccaagaatgcagtttgtaaagatcaaaacaccttaaaggagtataatttgaattcgagtttttgctcaaggtcataaaatcttccatgagtgcatagg 6473328  T
Q  271 cttgaggcttatgctttctt-ccccaatcgggatcaagtttagcaagaacagcaataccataaaggaaatatcctaaatgattaagctgagcattataaa 369  Q
    ||||||||||||  |||||| |||||| | |||||||  |||||||| || ||||| ||||| || || || |||||||||| | | ||| |||||||||    
T  6473327 cttgaggcttat-atttcttaccccaaactggatcaatcttagcaagcactgcaattccatagagaaagtaacctaaatgataatgatgatcattataaa 6473229  T
Q  370 tt 371  Q
    ||    
T  6473228 tt 6473227  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 240 - 370
Target Start/End: Original strand, 6457236 - 6457366
Alignment:
Q  240 aagttcatgaaatcttccatgagtgcataagcttgaggcttatgctttcttccccaatcgggatcaagtttagcaagaacagcaataccataaaggaaat 339  Q
    ||||||| ||||||| ||||||||| |||||||||||| |||| ||||||||||||| | |||||||  || ||||| || ||||| ||||| || || |    
T  6457236 aagttcaggaaatctgccatgagtgaataagcttgaggtttatactttcttccccaagctggatcaatctttgcaagcactgcaattccatagagaaagt 6457335  T
Q  340 atcctaaatgattaagctgagcattataaat 370  Q
    |||||||||||| | | ||| ||||||||||    
T  6457336 atcctaaatgataatgatgatcattataaat 6457366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 135 - 369
Target Start/End: Original strand, 6465091 - 6465325
Alignment:
Q  135 tgatatcttccattttcaaactcagctaatccaccagcccaagaatggagtttataaagatcaaaacaacgcaagcgcgtgtaattcgaattcaaacttg 234  Q
    |||| |||||||| | | ||||||| ||| || || ||||| ||||| | |||| ||||||| ||||| |  |  || ||||||||||| |||  | ||     
T  6465091 tgatttcttccatctccgaactcagttaaccctccggcccacgaatgcaatttaaaaagatcgaaacaccttagacgggtgtaattcgagttcggatttc 6465190  T
Q  235 tgctcaagttcatgaaatcttccatgagtgcataagcttgaggcttatgctttcttccccaatcgggatcaagtttagcaagaacagcaataccataaag 334  Q
    ||||||||||||| |||||  ||||||||| ||||||||||||||||| ||| || ||||||   |||||||  || ||||| |||||||| ||||| ||    
T  6465191 tgctcaagttcataaaatcagccatgagtgaataagcttgaggcttatacttcctaccccaaattggatcaatctttgcaagcacagcaattccatagag 6465290  T
Q  335 gaaatatcctaaatgattaagctgagcattataaa 369  Q
     || ||||||||||||| | | ||| |||||||||    
T  6465291 aaagtatcctaaatgataatgatgatcattataaa 6465325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 6523248 - 6523358
Alignment:
Q  233 tgtgctcaagttcatgaaatcttccatgagtgcataagcttgaggcttatgctttcttccccaatcgggatcaagtttagcaagaacagcaataccataa 332  Q
    ||||||||||||||| |||||||||||||||| |||| ||||| |||||| |||    |||||||  |||||||   |  ||||||||| ||||||||||    
T  6523248 tgtgctcaagttcataaaatcttccatgagtgaataaacttgaagcttatacttctcaccccaatatggatcaatcattacaagaacagaaataccataa 6523347  T
Q  333 aggaaatatcc 343  Q
    |||||||||||    
T  6523348 aggaaatatcc 6523358  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 343
Target Start/End: Original strand, 6528006 - 6528159
Alignment:
Q  190 aaagatcaaaacaacgcaagcgcgtgtaattcgaattcaaacttgtgctcaagttcatgaaatcttccatgagtgcataagcttgaggcttatgctttct 289  Q
    ||||||||||||| |  || ||||  ||||| || |||||||| |||||||| ||||| ||||||||||  | || ||| ||||||| ||||| ||| ||    
T  6528006 aaagatcaaaacacctaaaacgcgcataatttgagttcaaactcgtgctcaaattcataaaatcttccaataatgaatatgcttgagccttatacttcct 6528105  T
Q  290 tccccaatcgggatcaagtttagcaagaacagcaataccataaaggaaatatcc 343  Q
     |||||| | |||||||  |||||||| ||||||||  ||||||  ||||||||    
T  6528106 accccaagctggatcaatcttagcaagcacagcaattgcataaacaaaatatcc 6528159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 16 - 384
Target Start/End: Complemental strand, 9665847 - 9665479
Alignment:
Q  16 cagcttgaatttccaatgctgttagggttgatccagtagcaacaacattggcatcaccatatgctaaacctagcaatgtggctgagtaatatgcattaat 115  Q
    |||||||||||||||| ||    || ||||||||| | | ||||||||||||||||||||| |||||||| | |||||| ||||  || |||||||||||    
T  9665847 cagcttgaatttccaaagcaaaaagtgttgatccaattgaaacaacattggcatcaccataagctaaaccgatcaatgtagctgcatagtatgcattaat 9665748  T
Q  116 agcttcactgctacctttctgatatcttccattttcaaactcagctaatccaccagcccaagaatggagtttataaagatcaaaacaacgcaagcgcgtg 215  Q
    |||||||||  | ||||||||||||||||| | |  ||||||   |||||| || ||||| ||||| || || |||||||||||||| ||||| ||||||    
T  9665747 agcttcactcgttcctttctgatatcttccttctggaaactcttttaatcctcctgcccatgaatgcagcttgtaaagatcaaaacaccgcaaacgcgtg 9665648  T
Q  216 taattcgaattcaaacttgtgctcaagttcatgaaatcttccatgagtgcataagcttgaggcttatgctttcttccccaatcgggatcaagtttagcaa 315  Q
    ||||| |  ||  ||| |||||| ||||||| |||||||||||| |||| ||| ||||||||||||| |||||| |||||||||||||| || ||| | |    
T  9665647 taattagggtttgaacatgtgcttaagttcacgaaatcttccataagtgaataggcttgaggcttatactttctaccccaatcgggatcgagcttaacca 9665548  T
Q  316 gaacagcaataccataaaggaaatatcctaaatgattaagctgagcattataaatttccgaacctaaac 384  Q
     ||||||||| ||||||||||||||||| ||||||| ||| || |||||||||| ||| ||||| ||||    
T  9665547 taacagcaatcccataaaggaaatatcccaaatgatgaagttgggcattataaaattcagaaccaaaac 9665479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 239 - 371
Target Start/End: Complemental strand, 3754144 - 3754012
Alignment:
Q  239 caagttcatgaaatcttccatgagtgcataagcttgaggcttatgctttcttccccaatcgggatcaagtttagcaagaacagcaataccataaaggaaa 338  Q
    ||||||||| ||||||| ||  |||| ||||||||| || |||| ||||  |||||||   |||||||  || |||||||||||||| |||||||| |||    
T  3754144 caagttcataaaatcttgcaaaagtgaataagcttgtggtttatacttttgtccccaaaatggatcaatctttgcaagaacagcaattccataaagaaaa 3754045  T
Q  339 tatcctaaatgattaagctgagcattataaatt 371  Q
    || |||||||||| | | ||| |||||||||||    
T  3754044 taacctaaatgataatgatgatcattataaatt 3754012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 16 - 384
Target Start/End: Complemental strand, 13536871 - 13536503
Alignment:
Q  16 cagcttgaatttccaatgctgttagggttgatccagtagcaacaacattggcatcaccatatgctaaacctagcaatgtggctgagtaatatgcattaat 115  Q
    |||||||||||||||| ||    || ||||||||| | | ||||||||||||||||||||| |||||||| | |||||| ||||  || |||||||||||    
T  13536871 cagcttgaatttccaaagcaaaaagtgttgatccaattgaaacaacattggcatcaccataagctaaaccgatcaatgtagctgcatagtatgcattaat 13536772  T
Q  116 agcttcactgctacctttctgatatcttccattttcaaactcagctaatccaccagcccaagaatggagtttataaagatcaaaacaacgcaagcgcgtg 215  Q
    |||||||||  | ||||||||||||||||| | |  ||||||   |||||| || ||||| ||||| || || |||||||||||||| ||||| ||||||    
T  13536771 agcttcactcgttcctttctgatatcttccttctggaaactcttttaatcctcctgcccatgaatgcagcttgtaaagatcaaaacaccgcaaacgcgtg 13536672  T
Q  216 taattcgaattcaaacttgtgctcaagttcatgaaatcttccatgagtgcataagcttgaggcttatgctttcttccccaatcgggatcaagtttagcaa 315  Q
    ||||| |  ||  ||| |||||| ||||||| |||||||||||| |||| ||| ||||||||||||| |||||| |||||||||||||| || ||| | |    
T  13536671 taattagggtttgaacatgtgcttaagttcacgaaatcttccataagtgaataggcttgaggcttatactttctaccccaatcgggatcgagcttaacca 13536572  T
Q  316 gaacagcaataccataaaggaaatatcctaaatgattaagctgagcattataaatttccgaacctaaac 384  Q
     ||||||||| ||||||||||||||||| ||||||| ||| || |||||||||| ||| ||||| ||||    
T  13536571 taacagcaatcccataaaggaaatatcccaaatgatgaagttgggcattataaaattcagaaccaaaac 13536503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 33 - 271
Target Start/End: Complemental strand, 35231955 - 35231717
Alignment:
Q  33 gctgttagggttgatccagtagcaacaacattggcatcaccatatgctaaacctagcaatgtggctgagtaatatgcattaatagcttcactgctacctt 132  Q
    ||||||| ||||| |||||||| |||||||||||||||||||||| ||||||||| |||    || || || |||||| ||| |||||||||  | || |    
T  35231955 gctgttaaggttggtccagtagtaacaacattggcatcaccatattctaaacctatcaagcgagcagaatagtatgcaataacagcttcactagttccct 35231856  T
Q  133 tctgatatcttccattttcaaactcagctaatccaccagcccaagaatggagtttataaagatcaaaacaacgcaagcgcgtgtaattcgaattcaaact 232  Q
    ||||||||||||| |||||||| ||   ||| || ||||||||||| || |  ||||| ||||| ||||| |  ||  | || |||||||  ||| |||     
T  35231855 tctgatatcttcccttttcaaattcttttaaccctccagcccaagagtgaaacttatatagatcgaaacaccttaaatgtgtataattcgggttcgaaca 35231756  T
Q  233 tgtgctcaagttcatgaaatcttccatgagtgcataagc 271  Q
    ||||||||||||||| || |||| ||| |||| ||||||    
T  35231755 tgtgctcaagttcataaactcttgcataagtgaataagc 35231717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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