View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12912_low_6 (Length: 385)
Name: NF12912_low_6
Description: NF12912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12912_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 11 - 369
Target Start/End: Original strand, 29006025 - 29006383
Alignment:
| Q |
11 |
cataggcacctccaaatacccatactatacatctcatatcaaactaagaatgagaagttgtcacataaagcaaacaaacgtaactctgattcctagtggc |
110 |
Q |
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| T |
29006025 |
cataggcacctccaaatacccatactatacatctcatatcaaactaagaatgagaagttgtcacataaagcaaacaaatgtaactctgattcctagtggc |
29006124 |
T |
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| Q |
111 |
cccgacataaaaaataaataatgaatccaaagacaagggtcagggggtcaagaagcaagttggagctttaattgacaccagttgtctacatacctgttgt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006125 |
cccgacataaaaaataaataatgaatccaaagacaagggtcagggggtcaagaagcaagttggagctttaattgacaccagttgtctacatacctgttgt |
29006224 |
T |
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| Q |
211 |
ttatggtgataataatgtctaaatattcattaagaagaatgtgctaggtagatgacctaagaataagactcaatcatgtttgccattataaatgacatgt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006225 |
ttatggtgataataatgtctaaatattcattaagaagaatgtgctaggtagatgacctaagaataagactcaatcatgtttgccattataaatgacatgt |
29006324 |
T |
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| Q |
311 |
ctcttttcttattaagcactaatggaaacaactcacaaaatgcttggacacgttgttat |
369 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006325 |
ctcttttcttattaaacactaatggaaacaactcacaaaatgcttggacacgttgttat |
29006383 |
T |
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