View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12912_low_7 (Length: 373)
Name: NF12912_low_7
Description: NF12912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12912_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 156 - 353
Target Start/End: Original strand, 30870197 - 30870402
Alignment:
| Q |
156 |
aaaaatatataaaaaagttaaatttaatgaatccacatta------gttagttagaaaatgttgatatgtgcagcttgaattttctttacacatttttta |
249 |
Q |
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| T |
30870197 |
aaaaatatataaaaaagttaaatttaatgagtccacattactattagttagttagaaaatgttgatatgtgcagcttgaattttctttacacatttttta |
30870296 |
T |
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| Q |
250 |
aaaagtatttataatacaga--atatatatattgacgtataattatactataatcaagtaatctgtgcacccgagcatgttgctgctgcacgcaaatgga |
347 |
Q |
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| T |
30870297 |
aaaagtatttataatacagaatatatatatattgacgtataattatactataatcaagtaatccgtgcacccgagcatgttgctgctgcacgcaaatgga |
30870396 |
T |
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| Q |
348 |
cagcag |
353 |
Q |
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|||||| |
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| T |
30870397 |
cagcag |
30870402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 75 - 160
Target Start/End: Original strand, 30869930 - 30870015
Alignment:
| Q |
75 |
accttatatgaataatattttgtagtttaggttagttgagatataaagtctcaacaagggacatccaatataaatttgtataaaaa |
160 |
Q |
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| T |
30869930 |
accttatatgaatgatattttgtagtttaggttagttgagatataaagtctcaacaagggacatccaatataaatttgtataaaaa |
30870015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 30869861 - 30869896
Alignment:
| Q |
11 |
ttatactattatgcataaaaaatactgatattttgt |
46 |
Q |
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| T |
30869861 |
ttatactattatgcataaaaaatactgatattttgt |
30869896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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