View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12913_high_1 (Length: 720)

Name: NF12913_high_1
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12913_high_1
NF12913_high_1
[»] chr2 (1 HSPs)
chr2 (17-718)||(710554-711268)


Alignment Details
Target: chr2 (Bit Score: 594; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 17 - 718
Target Start/End: Complemental strand, 711268 - 710554
Alignment:
Q  17 agttacaacttcattcgttagcaaaagtagtgtttactaaacatagtaa---aaagtacacgtaataatatgaaaaacaaaaacacaatcaatcaaacgt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  711268 agttacaacttcattcgttagcaaaagtagtgtttactaaacatagtaataaaaagtacacgtaataatatgaaaaacaaaaacacaatcaatcaaacgt 711169  T
Q  114 acctgaatttgtttgttttccatcatcctcttttctttctctggatattgttatcttccttcatcgttatttctcttcccttaatattcattcattcatt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  711168 acctgaatttgtttgttttccatcatcctcttttctttctctggatattgttaccttccttcatcgttatttctcttcccttaatattcattcattcatt 711069  T
Q  214 cat----attggcacctcctctttctccaatgcatgcaatgggagataatccacgctccccgccaacattggatttgcacaatctctttaagatgcctaa 309  Q
    |||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  711068 cattcatattggcacctcctctttctccaatgcatgcaatgggagataatccacgctccccgccaacattggatttgcacaatctctttaagatgcctaa 710969  T
Q  310 aactaaatcattgaaagatgttagcaaggtttgcaaaacgtttgtacacaaacgacaccatgacaagaaacacaatgaggtaatcttaatcaatatttac 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  710968 aactaaatcattgaaagatgttagcaaggtttgcaaaacgtttgtacacaaacgacaccatgacaagaaacacaatgaggtaatcttaatcaatatttac 710869  T
Q  410 atgcatgttggtagaacacacatttaattaatctcctttgaaaaatgttacctatcattcaatctaaacaag---nnnnnnnnnnnnnntcattacattt 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||    
T  710868 atgcatgttggtagaacacacatttaattaatctcctttgaaaaatgttacctatcattcaatctaaacaagaaaaaaaaataaaaaaatcattacattt 710769  T
Q  507 catataattaataaacttatcacaatacttttactagaaaaagttgaatctccaaaccaaaataaaataaaatatgtgtatagtttcatctgtgagtatt 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  710768 catataattaataaacttatcacaatacttttactagaaaaagttgaatctccaaaccaaaataaaataaaatatgtgtatagtttcatctgggagtatt 710669  T
Q  607 atagaaacatcaaaacgagagtcatgcaaatgcaaatggtataagtttgcagaaac---atttgatgtgctgggatgtggatttgtagcgtgatacccct 703  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||    
T  710668 atagaaacatcaaaacgagagtcatgcaagtgcaaatggtataagtttgcagagacattatttgatgtgctgggatgtggatttgtagcgtgatacccct 710569  T
Q  704 cttcttctcactcga 718  Q
    ||||||| |||||||    
T  710568 cttcttcacactcga 710554  T

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