View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12913_high_10 (Length: 524)
Name: NF12913_high_10
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12913_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 89 - 488
Target Start/End: Original strand, 36443660 - 36444060
Alignment:
| Q |
89 |
cgctcgtcatataaaattt-gaatacaaatattttacacagaaaaataagtatatgtaaagaaatattgaagtagtgacaaattaattcccacattttac |
187 |
Q |
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| T |
36443660 |
cgctcgtcatagaaaatttagaatacaaatattttacacagaaaaataagtatatgtaaagaaatattgaagtagtgacaaattaattcccacattttac |
36443759 |
T |
|
| Q |
188 |
ccgtattaactgctccaacggctttacacttgtcatttttcatgcatcacgtttctgtcctaagtgacaaatacacacggattcataacccccacgtcct |
287 |
Q |
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| T |
36443760 |
ccgtactaactgctccaacggctttgcacttgtcatttttcatgcatcacgtttctgtcctaagtgacaaatacacacggattcataacccccacctccg |
36443859 |
T |
|
| Q |
288 |
tttttccttttcaatctataaatgcaagttagggcaagtctttttcaagcttagtgtttgaggcagagaatacaaggctatattctcatctattcaatta |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36443860 |
tttttccttttcaatctataaatgcaagttagggcaagtctttttcaagcttagtgtttgaggcagagaatacaaggctatattctcatctattcaatta |
36443959 |
T |
|
| Q |
388 |
agtgtacacctcttttttgtccaacccnnnnnnnnngccataaagtttcaatttcaaggatatcgccttctatacagctgttgcatgatgattgtaagaa |
487 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36443960 |
agtgtacacctcttttttgtccaaccctttttctttgccataaagtttcaatttcaaggatatcgccttctacacagctgttgcatgatgattgtaagaa |
36444059 |
T |
|
| Q |
488 |
g |
488 |
Q |
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| T |
36444060 |
g |
36444060 |
T |
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