View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12913_high_13 (Length: 456)
Name: NF12913_high_13
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12913_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Complemental strand, 5114417 - 5113990
Alignment:
| Q |
18 |
taaaccaaagagttcatatctccccaactagtgctttctgttgaagttgttgtgattgtgctaccaccattgctcatgtcataaaaaccatcaattgttc |
117 |
Q |
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| T |
5114417 |
taaaccaaagagttcatatctccccaactagtgctttctgttgaagttgttgtgattgtgctaccaccattgctcatgtcataaaaaccatcaattgttc |
5114318 |
T |
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| Q |
118 |
tatccattatttgctgttggttcacacatacaagctcacttaaatcccttggaaaattttcaaacccttgaaatatatgtgatggttggcaatttccacc |
217 |
Q |
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| T |
5114317 |
tatccattatttgctgttggttcacacatacaagctcacttaaatcccttggaaaattttcaaacccttgaaatatatgtgatggttggcaatttccacc |
5114218 |
T |
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| Q |
218 |
attgtttgtaattgtattactcaccatggaaaaagggtttggaatgttcattaaacttgtgaaggatgtttgattgttcgtatcataatcaattatggat |
317 |
Q |
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| T |
5114217 |
attgtttgtaattgtattactcaccatggaaaaagggtttggaatgttcattaaacttgtgaaggatgtttgattgttcgtatcataatcaattatggat |
5114118 |
T |
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| Q |
318 |
gaatttgaaactggcataggatgaacagaatactctgcaggccaataaggagctgaactcatactattgacacccgaagccgccatcatcaaattctgat |
417 |
Q |
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| T |
5114117 |
gaatttgaaactggcataggatgaacagaatactctgcaggccaatatggtgctgaactcatactattgacacccaaagccgccatcatcaaattctgat |
5114018 |
T |
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| Q |
418 |
ttgtttctcttttcatctcttgtttcat |
445 |
Q |
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| T |
5114017 |
ttgtttctcttttcatctcttgtttcat |
5113990 |
T |
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