View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12913_high_14 (Length: 456)

Name: NF12913_high_14
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12913_high_14
NF12913_high_14
[»] chr4 (35 HSPs)
chr4 (125-448)||(50251018-50251341)
chr4 (1-124)||(50250841-50250964)
chr4 (277-409)||(45372419-45372551)
chr4 (7-111)||(50668966-50669070)
chr4 (293-377)||(7822585-7822669)
chr4 (280-376)||(7904649-7904745)
chr4 (276-415)||(7238081-7238220)
chr4 (276-335)||(49041499-49041558)
chr4 (279-341)||(7771056-7771118)
chr4 (62-124)||(48875747-48875809)
chr4 (57-111)||(48891326-48891380)
chr4 (273-414)||(7774187-7774328)
chr4 (276-377)||(7907941-7908042)
chr4 (276-341)||(48891061-48891126)
chr4 (6-117)||(37827050-37827161)
chr4 (295-377)||(7813096-7813178)
chr4 (308-414)||(50668622-50668728)
chr4 (276-344)||(48170947-48171018)
chr4 (70-119)||(48870448-48870497)
chr4 (70-119)||(48886134-48886183)
chr4 (279-415)||(7789667-7789803)
chr4 (293-377)||(7800253-7800337)
chr4 (273-329)||(7877384-7877440)
chr4 (50-117)||(7237820-7237887)
chr4 (279-377)||(45366582-45366683)
chr4 (276-347)||(48156788-48156859)
chr4 (277-335)||(48862899-48862960)
chr4 (56-118)||(48705465-48705527)
chr4 (308-414)||(48902529-48902635)
chr4 (281-347)||(50672166-50672232)
chr4 (67-112)||(48852576-48852621)
chr4 (67-112)||(49044313-49044358)
chr4 (276-377)||(49044590-49044691)
chr4 (280-347)||(48898368-48898438)
chr4 (67-115)||(49048701-49048749)
[»] chr3 (5 HSPs)
chr3 (285-415)||(11006332-11006462)
chr3 (54-117)||(47452011-47452074)
chr3 (307-377)||(47452299-47452369)
chr3 (72-117)||(11006078-11006123)
chr3 (72-117)||(11015641-11015686)
[»] chr5 (3 HSPs)
chr5 (276-371)||(29687673-29687768)
chr5 (277-412)||(1812006-1812141)
chr5 (58-117)||(42562439-42562498)
[»] chr8 (5 HSPs)
chr8 (288-344)||(12199956-12200012)
chr8 (288-344)||(12444384-12444440)
chr8 (7-117)||(12200212-12200322)
chr8 (7-117)||(12444640-12444750)
chr8 (276-390)||(15348465-15348579)
[»] chr7 (1 HSPs)
chr7 (7-111)||(48883712-48883816)
[»] chr6 (3 HSPs)
chr6 (67-117)||(21015714-21015764)
chr6 (51-124)||(21979751-21979824)
chr6 (293-347)||(21980022-21980076)
[»] scaffold0508 (1 HSPs)
scaffold0508 (277-341)||(11914-11978)
[»] chr1 (1 HSPs)
chr1 (277-329)||(24309841-24309893)


Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 125 - 448
Target Start/End: Original strand, 50251018 - 50251341
Alignment:
Q  125 gaaaattatgagattggggaatcaaacaagacttagtaaggttcactaaagaagcataatagtgggacgattcaaaatctatagaataaacttcatgagg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50251018 gaaaattatgagattggggaatcaaacaagacttagtaaggttcactaaagaagcataatagtgggacgattcaaaatctatagaataaacttcatgagg 50251117  T
Q  225 tgaatcttccattatggctagaattctaggaggagtttgtgcagtggaggtggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaa 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50251118 tgaatcttccattatggctagaattctaggaggagtttgtgcagtggaggtggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaa 50251217  T
Q  325 aaccaagacttagaaacacactttaattgtatgagagccttcactggcaacctaactaaaatttgagtgatcaattcgtgaggcagatacacttttggct 424  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50251218 aaccaagacttagaaacccactttaattgtataagagccttcactggcaacctaactaaaatttgagtgatcaattcgtgaggcagatacacttttggct 50251317  T
Q  425 gtgtcttcctctccatcctttgct 448  Q
    |||||||| |||||||||||||||    
T  50251318 gtgtcttcttctccatcctttgct 50251341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 50250841 - 50250964
Alignment:
Q  1 ttgagtggtcataaccaaaaccatatagatgattggaatgatatttctttaatttggaatcaaaatgagacaaaggtatttgtatgtgaagcccagtgga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50250841 ttgagtggtcataaccaaaaccatatagatgattggaatgatatttctttaatttggaatcaaaatgagacaaaggtatttgtatgtgaagcccggtgga 50250940  T
Q  101 tggattccataggtagaggcttga 124  Q
    ||||||||||||||||||||||||    
T  50250941 tggattccataggtagaggcttga 50250964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 277 - 409
Target Start/End: Original strand, 45372419 - 45372551
Alignment:
Q  277 gtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaacc 376  Q
    |||| |||||||||  |||||||| | || ||||||||||||| |||||||||||||||| ||||||| || ||  |||| |||| |||||| |||||||    
T  45372419 gtaatttgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaacc 45372518  T
Q  377 taactaaaatttgagtgatcaattcgtgaggca 409  Q
    | | || ||||||| | |||||||| |||||||    
T  45372519 ttagtagaatttgaatcatcaattcatgaggca 45372551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 50669070 - 50668966
Alignment:
Q  7 ggtcataaccaaaaccatatagatgattggaatgatatttctttaatttggaatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggatt 106  Q
    |||||||||||||||||||||||||||   ||||||||| ||||| ||||| ||||||| ||||||| ||||| ||| | ||||  |  |||||||||||    
T  50669070 ggtcataaccaaaaccatatagatgatcaaaatgatattcctttagtttggtatcaaaaggagacaatggtatctgtttatgaaatctggtggatggatt 50668971  T
Q  107 ccata 111  Q
    |||||    
T  50668970 ccata 50668966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 293 - 377
Target Start/End: Complemental strand, 7822669 - 7822585
Alignment:
Q  293 aatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaacct 377  Q
    |||||||| |||||||||||||||||||||||||||| || ||| |||||||||| ||  |||| |||  |||||| ||||||||    
T  7822669 aatttgcaaagtggggatcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacct 7822585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 7904745 - 7904649
Alignment:
Q  280 agttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaacc 376  Q
    |||||||||||  |||||||| |||| |||||||||||||||||||||||  ||||| ||||||| || ||  |||| |||| |||||| |||||||    
T  7904745 agttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcacaggcaacc 7904649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 415
Target Start/End: Original strand, 7238081 - 7238220
Alignment:
Q  276 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaac 375  Q
    |||| |||| |||||  |||||||| |||| || ||||||||||||||||||||||||||| ||||||| || ||    || |||| |||||||||||||    
T  7238081 ggtatgttggaaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcactggcaac 7238180  T
Q  376 ctaactaaaatttgagtgatcaattcgtgaggcagataca 415  Q
    || |  | ||||||  |||| | ||| |||||||||||||    
T  7238181 ctcatcagaatttggatgattagttcatgaggcagataca 7238220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 335
Target Start/End: Original strand, 49041499 - 49041558
Alignment:
Q  276 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagactt 335  Q
    |||||||| ||||||  |||||||| | ||||||||||||||||||||||||||||||||    
T  49041499 ggtaagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagactt 49041558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 7771118 - 7771056
Alignment:
Q  279 aagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaac 341  Q
    ||||||||||||  ||||| || |||| |||||||||||||||||||||||||||||| ||||    
T  7771118 aagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaac 7771056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 48875809 - 48875747
Alignment:
Q  62 aaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtagaggcttga 124  Q
    |||| |||||| |||||||||| ||||||  || |||||||||||||||||||||||||||||    
T  48875809 aaaaggagacataggtatttgtttgtgaaatccggtggatggattccataggtagaggcttga 48875747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 48891380 - 48891326
Alignment:
Q  57 gaatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccata 111  Q
    ||||||| | ||||||||||||||||| ||||||| |||||||||||||||||||    
T  48891380 gaatcaataggagacaaaggtatttgtttgtgaagtccagtggatggattccata 48891326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 273 - 414
Target Start/End: Original strand, 7774187 - 7774328
Alignment:
Q  273 ggtggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggc 372  Q
    |||||| |||||||||||  |||||||| | ||||||||||||||||||||||||||   |||| ||||||| || || || || |||| |||||| |||    
T  7774187 ggtggtgagttgaaaatgtgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaacacatttgaaatgaataagagacttcaccggc 7774286  T
Q  373 aacctaactaaaatttgagtgatcaattcgtgaggcagatac 414  Q
    | ||  |  || |||||| | |||||||| ||||| ||||||    
T  7774287 agccgcatcaagatttgaataatcaattcatgaggaagatac 7774328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 377
Target Start/End: Complemental strand, 7908042 - 7907941
Alignment:
Q  276 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaac 375  Q
    |||||||||||||||  |||||||| | |||||| ||||||||||||||||||| ||||||  |||| |||| ||  || | |||| |||||| ||||||    
T  7908042 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaac 7907943  T
Q  376 ct 377  Q
    ||    
T  7907942 ct 7907941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 341
Target Start/End: Complemental strand, 48891126 - 48891061
Alignment:
Q  276 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaac 341  Q
    |||||||||||||||| |||||||| | || ||||| |||| ||||||||||||||||||| ||||    
T  48891126 ggtaagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaac 48891061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 37827050 - 37827161
Alignment:
Q  6 tggtcataaccaaaaccatatagatgattggaatgatatttctttaatttggaatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggat 105  Q
    ||||||||||||||||||||||||  |  | ||| |||||  |  || ||||| | |||| ||||||| ||||||||| ||||||  |||||||||||||    
T  37827050 tggtcataaccaaaaccatatagagaaccgaaataatattcttccaaattggagttaaaaggagacaagggtatttgtttgtgaaatccagtggatggat 37827149  T
Q  106 tccataggtaga 117  Q
    |||||| |||||    
T  37827150 tccatatgtaga 37827161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 377
Target Start/End: Complemental strand, 7813178 - 7813096
Alignment:
Q  295 tttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaacct 377  Q
    |||||| ||||||| |||||||||||||||||||| || ||| |||||||||| ||  |||| |||  |||||| ||||||||    
T  7813178 tttgcaaagtggggttcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacct 7813096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 414
Target Start/End: Complemental strand, 50668728 - 50668622
Alignment:
Q  308 gatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaacctaactaaaatttgagtgatcaattcgtgagg 407  Q
    |||| ||||| |||||||||||||| ||| |||| ||||| ||  |||| |||   ||||| |||||||| || ||||||||| |||||||||||| | |    
T  50668728 gatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacctcaccaaaatttgaatgatcaattcgtaatg 50668629  T
Q  408 cagatac 414  Q
    |||||||    
T  50668628 cagatac 50668622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 276 - 344
Target Start/End: Original strand, 48170947 - 48171018
Alignment:
Q  276 ggtaagttgaaaatgcaaatttgcacagtggggatca---gagataagagaaaaccaagacttagaaacaca 344  Q
    ||||| |||||||||| |||||||| |||| ||||||   |||||||||| ||||||||||||| |||||||    
T  48170947 ggtaatttgaaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaaacaca 48171018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 48870497 - 48870448
Alignment:
Q  70 acaaaggtatttgtatgtgaagcccagtggatggattccataggtagagg 119  Q
    |||||||||||||| ||||||  || ||||||||||||||||||||||||    
T  48870497 acaaaggtatttgtttgtgaaatccggtggatggattccataggtagagg 48870448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 48886183 - 48886134
Alignment:
Q  70 acaaaggtatttgtatgtgaagcccagtggatggattccataggtagagg 119  Q
    |||||||||||||| ||||||  || ||||||||||||||||||||||||    
T  48886183 acaaaggtatttgtttgtgaaatccggtggatggattccataggtagagg 48886134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 415
Target Start/End: Complemental strand, 7789803 - 7789667
Alignment:
Q  279 aagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaaccta 378  Q
    ||||||||||||  ||||| || |||| ||||| ||||||| |||||||||||||||| |||| || || ||   ||| |||| |||||| ||||||||     
T  7789803 aagttgaaaatgtgaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctc 7789704  T
Q  379 actaaaatttgagtgatcaattcgtgaggcagataca 415  Q
    |  | ||||||  | |||| ||| |||||||||||||    
T  7789703 atcagaatttggattatcagttcatgaggcagataca 7789667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 377
Target Start/End: Complemental strand, 7800337 - 7800253
Alignment:
Q  293 aatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaacct 377  Q
    |||||||| || |||||||||||| |||||||||||| || ||| |||||||||| ||  |||| |||  |||||| ||||||||    
T  7800337 aatttgcaaagcggggatcagagacaagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacct 7800253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 7877440 - 7877384
Alignment:
Q  273 ggtggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaacca 329  Q
    |||||| |||||||||||  |||||||| | | ||||||||||||||||||||||||    
T  7877440 ggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaacca 7877384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 7237820 - 7237887
Alignment:
Q  50 taatttggaatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtaga 117  Q
    |||||||||||||||| ||||||  ||||||||| | | ||  ||||||||||||||||||| |||||    
T  7237820 taatttggaatcaaaaggagacacgggtatttgttttttaaatccagtggatggattccatacgtaga 7237887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 377
Target Start/End: Original strand, 45366582 - 45366683
Alignment:
Q  279 aagttgaaaatgcaaatttgcacagtggggatca---gagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaac 375  Q
    ||||||||||||  |||||||| |||| | ||||   |||||||||||||||||| ||||| |||| ||||| ||  |||| |||| ||||||||| |||    
T  45366582 aagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaac 45366681  T
Q  376 ct 377  Q
    ||    
T  45366682 ct 45366683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 347
Target Start/End: Original strand, 48156788 - 48156859
Alignment:
Q  276 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactt 347  Q
    ||||| |||||||||  |||||||| | || | ||| |||||||||||||||||||||||| |||| |||||    
T  48156788 ggtaatttgaaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcactt 48156859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 335
Target Start/End: Complemental strand, 48862960 - 48862899
Alignment:
Q  277 gtaagttgaaaatgcaaatttgcacagtggggatca---gagataagagaaaaccaagactt 335  Q
    ||||||||||||||  |||||||| |||| ||||||   |||||||||||||||||||||||    
T  48862960 gtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagactt 48862899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 48705465 - 48705527
Alignment:
Q  56 ggaatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtagag 118  Q
    |||| ||||| | ||||||||||||||| ||||||  ||||| ||||||||||| ||||||||    
T  48705465 ggaaccaaaaggtgacaaaggtatttgtttgtgaaatccagtagatggattccacaggtagag 48705527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 414
Target Start/End: Complemental strand, 48902635 - 48902529
Alignment:
Q  308 gatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaacctaactaaaatttgagtgatcaattcgtgagg 407  Q
    ||||||| ||||||||||||||||||||| ||||||| || ||  | ||||||| ||| || |||||||     ||||||||  |||||||||| |||||    
T  48902635 gatcagatataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccggcaaccactgcaaaatttggatgatcaattcatgagg 48902536  T
Q  408 cagatac 414  Q
     ||||||    
T  48902535 tagatac 48902529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 347
Target Start/End: Complemental strand, 50672232 - 50672166
Alignment:
Q  281 gttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactt 347  Q
    ||||||| ||||| |||||| | | | |||||||||| ||||||| ||| |||||||||||||||||    
T  50672232 gttgaaagtgcaattttgcaaaattgtgatcagagatgagagaaagccatgacttagaaacacactt 50672166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 48852621 - 48852576
Alignment:
Q  67 gagacaaaggtatttgtatgtgaagcccagtggatggattccatag 112  Q
    ||||||||||||||||| ||||||  || |||||||||||||||||    
T  48852621 gagacaaaggtatttgtttgtgaactccggtggatggattccatag 48852576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 49044313 - 49044358
Alignment:
Q  67 gagacaaaggtatttgtatgtgaagcccagtggatggattccatag 112  Q
    ||||||||||||||||| ||||||  | ||||||||||||||||||    
T  49044313 gagacaaaggtatttgtttgtgaactctagtggatggattccatag 49044358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 377
Target Start/End: Original strand, 49044590 - 49044691
Alignment:
Q  276 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaac 375  Q
    ||||| || ||||||  |||||||| ||||||  | ||||||||||||||||||  ||||| |||||||||| ||  |||  |||| | |||||||||||    
T  49044590 ggtaatttcaaaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcactggcaac 49044689  T
Q  376 ct 377  Q
    ||    
T  49044690 ct 49044691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 48898438 - 48898368
Alignment:
Q  280 agttgaaaatgcaaatttgcacagtggggatca---gagataagagaaaaccaagacttagaaacacactt 347  Q
    |||||||||||  |||||||| |||||| ||||   |||||||| || |||||||||||| ||||||||||    
T  48898438 agttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacactt 48898368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 49048701 - 49048749
Alignment:
Q  67 gagacaaaggtatttgtatgtgaagcccagtggatggattccataggta 115  Q
    ||||||||||||||||| ||||||  | ||||||||||||||| |||||    
T  49048701 gagacaaaggtatttgtctgtgaactctagtggatggattccaaaggta 49048749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 415
Target Start/End: Original strand, 11006332 - 11006462
Alignment:
Q  285 aaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaacctaactaaa 384  Q
    ||||||| | |||||| |||| ||||||||||||||||  ||||| |||||| |||||||||| ||  |||| || | |||||| |||||||| |  ||     
T  11006332 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 11006431  T
Q  385 atttgagtgatcaattcgtgaggcagataca 415  Q
    |||||  |||||||||| |||||||||||||    
T  11006432 atttgtatgatcaattcatgaggcagataca 11006462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 47452011 - 47452074
Alignment:
Q  54 ttggaatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtaga 117  Q
    |||||| ||||| ||| ||||||||||||| ||||||  ||||||||||||||||||| |||||    
T  47452011 ttggaaccaaaaggaggcaaaggtatttgtttgtgaactccagtggatggattccatatgtaga 47452074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 377
Target Start/End: Original strand, 47452299 - 47452369
Alignment:
Q  307 ggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaacct 377  Q
    ||||||||||||||||||||||| ||||||||||  ||||| ||  |||  |||| |||||| ||||||||    
T  47452299 ggatcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacct 47452369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 11006078 - 11006123
Alignment:
Q  72 aaaggtatttgtatgtgaagcccagtggatggattccataggtaga 117  Q
    |||||||||||| || || | |||||||||||||||||||||||||    
T  11006078 aaaggtatttgtctgagacgtccagtggatggattccataggtaga 11006123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 11015641 - 11015686
Alignment:
Q  72 aaaggtatttgtatgtgaagcccagtggatggattccataggtaga 117  Q
    |||||||||||| ||||| | ||||| |||||||||||||||||||    
T  11015641 aaaggtatttgtttgtgatgtccagttgatggattccataggtaga 11015686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 371
Target Start/End: Complemental strand, 29687768 - 29687673
Alignment:
Q  276 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactgg 371  Q
    |||||||||||||||  |||||||| |||| || | ||| || |||||||||||||||||| |||||||||| ||  |||| |||| |||||||||    
T  29687768 ggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcactgg 29687673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 412
Target Start/End: Complemental strand, 1812141 - 1812006
Alignment:
Q  277 gtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaacc 376  Q
    ||||||||||||||  |||||||| |||||||||  |||||||||||||||||  ||||| |||| || ||  |  ||||||||  ||||||||| ||||    
T  1812141 gtaagttgaaaatgataatttgcaaagtggggatttgagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaacc 1812042  T
Q  377 taactaaaatttgagtgatcaattcgtgaggcagat 412  Q
    | |  |||||||||  ||||| ||| ||||| ||||    
T  1812041 tcaacaaaatttgaacgatcagttcctgaggaagat 1812006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 42562439 - 42562498
Alignment:
Q  58 aatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtaga 117  Q
    |||||| | ||||||||||||||||| ||||| | ||  |||||||||||||||||||||    
T  42562439 aatcaataggagacaaaggtatttgtttgtgatgtccgatggatggattccataggtaga 42562498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 12200012 - 12199956
Alignment:
Q  288 atgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacaca 344  Q
    |||| |||||||| |||| ||||||||||||||||||||||| |||||| |||||||    
T  12200012 atgcgaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacaca 12199956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 12444440 - 12444384
Alignment:
Q  288 atgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacaca 344  Q
    |||| |||||||| |||| ||||||||||||||||||||||| |||||| |||||||    
T  12444440 atgcgaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacaca 12444384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 12200322 - 12200212
Alignment:
Q  7 ggtcataaccaaaaccatatagatgattggaatgatatttctttaatttggaatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggatt 106  Q
    |||||||||||||||||||||||||||    ||| |||   | ||| ||  |||||||| ||||||||||||||| | |||||| || || |||||||||    
T  12200322 ggtcataaccaaaaccatatagatgatgtcgatggtatgcatgtaacttcaaatcaaaaggagacaaaggtatttttttgtgaaacctagaggatggatt 12200223  T
Q  107 ccataggtaga 117  Q
    ||||| |||||    
T  12200222 ccatacgtaga 12200212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 12444750 - 12444640
Alignment:
Q  7 ggtcataaccaaaaccatatagatgattggaatgatatttctttaatttggaatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggatt 106  Q
    |||||||||||||||||||||||||||    ||| |||   | ||| ||  |||||||| ||||||||||||||| | |||||| || || |||||||||    
T  12444750 ggtcataaccaaaaccatatagatgatgtcgatggtatgcatgtaacttcaaatcaaaaggagacaaaggtatttttttgtgaaacctagaggatggatt 12444651  T
Q  107 ccataggtaga 117  Q
    ||||| |||||    
T  12444650 ccatacgtaga 12444640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 390
Target Start/End: Complemental strand, 15348579 - 15348465
Alignment:
Q  276 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaac 375  Q
    ||||| |||||||||  |||||||  |||  |||||||||||||||||||||||||||||| |||| || || ||  |||| |||| |||||| || |||    
T  15348579 ggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagacttcaccggtaac 15348480  T
Q  376 ctaactaaaatttga 390  Q
    ||  ||| |||||||    
T  15348479 ctctctagaatttga 15348465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 48883816 - 48883712
Alignment:
Q  7 ggtcataaccaaaaccatatagatgattggaatgatatttctttaatttggaatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggatt 106  Q
    ||||||||||||||||||||||||||| | ||| || |   | | |  |||||| |||| ||||||||||||||||| ||||||  |||||| |||||||    
T  48883816 ggtcataaccaaaaccatatagatgatcgaaataatgtacttctgaaatggaataaaaaggagacaaaggtatttgtttgtgaaatccagtgtatggatt 48883717  T
Q  107 ccata 111  Q
    |||||    
T  48883716 ccata 48883712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 21015764 - 21015714
Alignment:
Q  67 gagacaaaggtatttgtatgtgaagcccagtggatggattccataggtaga 117  Q
    ||||||||||||||||| ||||||  | |||||||||||||||||||||||    
T  21015764 gagacaaaggtatttgtttgtgaactctagtggatggattccataggtaga 21015714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 21979751 - 21979824
Alignment:
Q  51 aatttggaatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtagaggcttga 124  Q
    ||||||||||||| | ||||||||||||||||| | ||||| ||||| || || ||||||| |||||| |||||    
T  21979751 aatttggaatcaagaggagacaaaggtatttgtttttgaagtccagtagacgggttccatatgtagagtcttga 21979824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 347
Target Start/End: Original strand, 21980022 - 21980076
Alignment:
Q  293 aatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactt 347  Q
    |||| ||| ||| ||||| |||||| |||||||||||||||||| ||||||||||    
T  21980022 aattcgcaaagttgggatgagagatgagagaaaaccaagacttacaaacacactt 21980076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 341
Target Start/End: Complemental strand, 11978 - 11914
Alignment:
Q  277 gtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaac 341  Q
    ||||||||||||||  |||||||| ||||   ||||||||||||||||||||| |||||| ||||    
T  11978 gtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaac 11914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 329
Target Start/End: Complemental strand, 24309893 - 24309841
Alignment:
Q  277 gtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaacca 329  Q
    ||||||||||||||  |||||||| |||| | |||||||||||||||||||||    
T  24309893 gtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaacca 24309841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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