View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12913_high_15 (Length: 452)

Name: NF12913_high_15
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12913_high_15
NF12913_high_15
[»] chr3 (57 HSPs)
chr3 (18-438)||(3754528-3754948)
chr3 (18-385)||(4141896-4142260)
chr3 (18-376)||(4157715-4158070)
chr3 (34-156)||(3745952-3746074)
chr3 (48-155)||(2678385-2678492)
chr3 (47-146)||(803213-803312)
chr3 (44-168)||(989350-989474)
chr3 (48-154)||(2686299-2686408)
chr3 (90-161)||(2456249-2456320)
chr3 (48-154)||(968629-968735)
chr3 (52-149)||(1007423-1007520)
chr3 (52-149)||(1022451-1022548)
chr3 (47-146)||(2696727-2696826)
chr3 (80-137)||(997566-997623)
chr3 (80-137)||(1013956-1014013)
chr3 (89-158)||(1931137-1931206)
chr3 (90-139)||(13498224-13498273)
chr3 (93-165)||(9587161-9587233)
chr3 (52-167)||(956343-956458)
chr3 (48-139)||(2459233-2459324)
chr3 (88-139)||(9608346-9608397)
chr3 (49-139)||(1891066-1891156)
chr3 (90-152)||(2644351-2644413)
chr3 (90-152)||(2659141-2659203)
chr3 (90-139)||(771501-771550)
chr3 (48-149)||(1936972-1937073)
chr3 (89-158)||(1940562-1940631)
chr3 (90-146)||(2442039-2442095)
chr3 (91-139)||(2631358-2631406)
chr3 (90-165)||(7334215-7334290)
chr3 (89-155)||(7432040-7432106)
chr3 (90-139)||(7324433-7324482)
chr3 (90-139)||(37753347-37753396)
chr3 (90-139)||(43991960-43992009)
chr3 (90-158)||(2476634-2476702)
chr3 (90-158)||(7942485-7942553)
chr3 (90-165)||(783775-783850)
chr3 (90-152)||(2502148-2502210)
chr3 (90-144)||(12133097-12133151)
chr3 (100-150)||(44001605-44001655)
chr3 (90-139)||(754611-754660)
chr3 (98-139)||(1438003-1438044)
chr3 (90-139)||(9561987-9562036)
chr3 (92-157)||(23197014-23197079)
chr3 (91-139)||(2492083-2492131)
chr3 (311-378)||(3746229-3746295)
chr3 (96-139)||(7427607-7427650)
chr3 (96-139)||(12218033-12218076)
chr3 (96-158)||(13479584-13479646)
chr3 (102-139)||(746385-746422)
chr3 (51-145)||(899967-900063)
chr3 (90-139)||(7430538-7430587)
chr3 (91-136)||(7442982-7443027)
chr3 (90-139)||(9565831-9565880)
chr3 (100-133)||(37757744-37757777)
chr3 (91-139)||(768331-768379)
chr3 (353-385)||(1889348-1889380)
[»] chr5 (17 HSPs)
chr5 (20-385)||(11081740-11082108)
chr5 (80-149)||(23766854-23766923)
chr5 (80-149)||(23816702-23816771)
chr5 (89-158)||(23769629-23769698)
chr5 (89-158)||(23819477-23819546)
chr5 (90-139)||(20292995-20293044)
chr5 (89-153)||(23732166-23732230)
chr5 (89-139)||(3181716-3181766)
chr5 (90-139)||(20301443-20301492)
chr5 (90-139)||(20305856-20305905)
chr5 (90-139)||(20310260-20310309)
chr5 (89-158)||(23861009-23861078)
chr5 (83-155)||(1427679-1427751)
chr5 (89-137)||(41973474-41973522)
chr5 (89-158)||(23764243-23764312)
chr5 (89-158)||(23814076-23814145)
chr5 (90-139)||(6401768-6401817)
[»] scaffold0044 (1 HSPs)
scaffold0044 (88-158)||(89141-89211)
[»] chr7 (4 HSPs)
chr7 (88-158)||(39298975-39299045)
chr7 (90-167)||(1078134-1078211)
chr7 (89-139)||(1421171-1421221)
chr7 (94-139)||(3927063-3927108)
[»] chr4 (6 HSPs)
chr4 (80-158)||(22672110-22672188)
chr4 (80-167)||(20019746-20019833)
chr4 (90-139)||(11032910-11032959)
chr4 (102-146)||(20016180-20016224)
chr4 (358-398)||(27471335-27471375)
chr4 (100-151)||(55419792-55419843)
[»] chr8 (1 HSPs)
chr8 (80-157)||(19727871-19727948)
[»] chr1 (9 HSPs)
chr1 (89-158)||(51381438-51381507)
chr1 (88-140)||(23896138-23896190)
chr1 (90-139)||(24629213-24629262)
chr1 (89-132)||(24246506-24246549)
chr1 (88-139)||(25478863-25478914)
chr1 (89-139)||(24242859-24242909)
chr1 (89-139)||(51782798-51782848)
chr1 (89-139)||(51858605-51858655)
chr1 (89-129)||(24634817-24634857)
[»] chr2 (10 HSPs)
chr2 (90-139)||(36577366-36577415)
chr2 (90-135)||(33026657-33026702)
chr2 (90-165)||(7160730-7160805)
chr2 (93-164)||(7168667-7168738)
chr2 (88-135)||(33038158-33038205)
chr2 (90-164)||(7156169-7156243)
chr2 (100-144)||(6538844-6538888)
chr2 (90-158)||(7174356-7174424)
chr2 (91-135)||(33020314-33020358)
chr2 (90-139)||(34570471-34570520)
[»] scaffold0015 (2 HSPs)
scaffold0015 (88-139)||(32331-32382)
scaffold0015 (89-139)||(40383-40433)
[»] scaffold0200 (1 HSPs)
scaffold0200 (89-137)||(782-830)
[»] chr6 (12 HSPs)
chr6 (93-149)||(370777-370833)
chr6 (91-139)||(24417488-24417536)
chr6 (96-151)||(1442098-1442153)
chr6 (92-139)||(19119065-19119112)
chr6 (92-139)||(19126359-19126406)
chr6 (94-140)||(9819830-9819876)
chr6 (101-151)||(176345-176395)
chr6 (94-144)||(7564748-7564798)
chr6 (94-140)||(9825516-9825562)
chr6 (94-139)||(1459543-1459588)
chr6 (94-139)||(1470925-1470970)
chr6 (94-139)||(9703888-9703933)
[»] scaffold1004 (1 HSPs)
scaffold1004 (91-138)||(2144-2191)
[»] scaffold0760 (1 HSPs)
scaffold0760 (91-138)||(4639-4686)


Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 57)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Original strand, 3754528 - 3754948
Alignment:
Q  18 ggaggggtggatgttggtgacttgtcggttttgggtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaa 117  Q
    ||||||||||||||  ||||| |||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3754528 ggaggggtggatgtgtgtgacatgtcggctttgagtgttttgagggattgcttgtgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaa 3754627  T
Q  118 ataaagagtcttggactaaatttttcactattccttacatgagagatccttctaaacctaaggcctttgcgaaggcattgtatacttttgaggatgatca 217  Q
    |||||||||||||||||||||| || |||||||||| |||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||    
T  3754628 ataaagagtcttggactaaattgtttactattccttgcatgagagatccttctaaacccgaggtctttgcgaaggcattgtatacttttgaggatgatca 3754727  T
Q  218 agtgttgctgaagtttatgaatgatattgacttgaatttggttctttacaaccccaggagcagtaccttgaaggctattaactttaaatatactccagaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3754728 agtgttgctgaagtttatgaatgatattgacttgaatttggttctttacaaccccaggagcggtaccttgaaggctattaactttaaatatactccagaa 3754827  T
Q  318 gtctgtggtgaaagtttaatatctccatcttctctatgctaggatgtagatgtggtgctatgtcacttaaacattagattcaagtgcaacctttttgtac 417  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3754828 gtctgtggtgaaagtttaatatcaccatcttctctatgctaggatgtagatgtggtgctatgtcacttaaacataagattcaagtgcaacctttttgtac 3754927  T
Q  418 ttgttttgattacatgttatt 438  Q
    |||||||||||||||||||||    
T  3754928 ttgttttgattacatgttatt 3754948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 4142260 - 4141896
Alignment:
Q  18 ggaggggtggatgttggtgacttgtcggttttgggtgttttgagggattgcttatgcgtgac---ttctggtgttgatgtttgggttatgaaggaatatg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||   ||||||   |||||||||| |||||||||||||||    
T  4142260 ggaggggtggatgttggtgacttgtcggttttgggtgttttgagggattgcttgtgcgtgacgacttctggctatgatgtttggcttatgaaggaatatg 4142161  T
Q  115 gaaataaagagtcttggactaaatttttcactattccttacatgagagatccttctaaacctaaggcctttgcgaaggcattgtatacttttgaggatga 214  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |  ||| | |||| | |||  ||||||||||||    
T  4142160 gaaataaagagtcttggactaaattgttcactattccttacatgagagatccttctaaacctaaggtcgatgccagggcaatatatgtttttgaggatga 4142061  T
Q  215 tcaagtgttgctgaagtttatgaatgatattgacttgaatttggttctttacaaccccaggagcagtaccttgaaggctattaactttaaatatactcca 314  Q
    |||||||||||||||||      ||||| |||||||||||||| |||||||||| ||||||||  |||| || ||||||| ||| ||||||   | |||     
T  4142060 tcaagtgttgctgaagt------atgattttgacttgaatttgattctttacaatcccaggaggggtactttcaaggctactaattttaaacgaattcct 4141967  T
Q  315 gaagtctgtggtgaaagtttaatatctccatcttctctatgctaggatgtagatgtggtgctatgtcactt 385  Q
    |||||||||| ||||||||||||||| ||   ||||||||||||| || ||||||| ||||||||||||||    
T  4141966 gaagtctgtgttgaaagtttaatatcacctagttctctatgctagaatatagatgtagtgctatgtcactt 4141896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 4158070 - 4157715
Alignment:
Q  18 ggaggggtggatgttggtgacttgtcggttttgggtgttttgagggattgcttatgcgtgac---ttctggtgttgatgtttgggttatgaaggaatatg 114  Q
    ||||||||||||||  |||||||||||| |||||||||||||||||||||||| ||||||||   |||||||  |||||||||| |||||||||||||||    
T  4158070 ggaggggtggatgtgtgtgacttgtcggctttgggtgttttgagggattgcttgtgcgtgaccacttctggttatgatgtttggcttatgaaggaatatg 4157971  T
Q  115 gaaataaagagtcttggactaaatttttcactattccttacatgagagatccttctaaacctaaggcctttgcgaaggcattgtatacttttgaggatga 214  Q
    ||||||||||||||||||||||||| ||||||||  |||||| |||| |||||||||||  |||||| ||||| |||||| | |||  ||||||||||||    
T  4157970 gaaataaagagtcttggactaaattgttcactatctcttacaagagacatccttctaaatttaaggcttttgccaaggcaatatatgtttttgaggatga 4157871  T
Q  215 tcaagtgttgctgaagtttatgaatgatattgacttgaatttggttctttacaaccccaggagcagtaccttgaaggctattaactttaaatatactcca 314  Q
    ||||||||||||| |||   || |||||  ||||||||||||||| |||||||||||||||||| | || |||||||||| ||| ||||||   | |||     
T  4157870 tcaagtgttgctggagt---tgtatgattctgacttgaatttggtcctttacaaccccaggagcggcactttgaaggctactaattttaaactaattcct 4157774  T
Q  315 gaagtctgtggtgaaagtttaatatctccatcttctctatgctaggatgtagatgtggtgct 376  Q
    ||||| |||  ||||||||||||||| ||   |||||||   |||||||||||||| |||||    
T  4157773 gaagtatgtattgaaagtttaatatcacctagttctcta---taggatgtagatgtagtgct 4157715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 3745952 - 3746074
Alignment:
Q  34 gtgacttgtcggttttgggtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggac 133  Q
    |||||||||||  |||||||||||| ||||||||||| |||||||||||||||| |||| ||||| ||||||||||||||| |||  |||||||||||||    
T  3745952 gtgacttgtcgtctttgggtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggac 3746051  T
Q  134 taaatttttcactattccttaca 156  Q
    |||||| || |||||||||||||    
T  3746052 taaattgttgactattccttaca 3746074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 48 - 155
Target Start/End: Complemental strand, 2678492 - 2678385
Alignment:
Q  48 ttgggtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcacta 147  Q
    ||||||||||||| ||||||||| ||| |||||| ||||| ||||||||||||||||||  |||||||||| |||||||| ||||||||||| |||||||    
T  2678492 ttgggtgttttgaaggattgcttgtgcttgacttgtggtgatgatgtttgggttatgaaacaatatggaaaaaaagagtcatggactaaattgttcacta 2678393  T
Q  148 ttccttac 155  Q
    ||||||||    
T  2678392 ttccttac 2678385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 47 - 146
Target Start/End: Complemental strand, 803312 - 803213
Alignment:
Q  47 tttgggtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcact 146  Q
    ||||||| | |||||||||||||| ||| ||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||    
T  803312 tttgggtatgttgagggattgcttgtgcatgatttctggtgatgatgtttgggttatgaaagaatatggaaataaagagtcttggactaagttgttcact 803213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 168
Target Start/End: Original strand, 989350 - 989474
Alignment:
Q  44 ggttttgggtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttc 143  Q
    |||||||  ||||||||| |||||||| ||| |   |||||||| |||||||||||| ||||| || || |||||||||||||||||||||||||| |||    
T  989350 ggttttgactgttttgagagattgcttgtgcattttttctggtgatgatgtttgggtaatgaaagagtacggaaataaagagtcttggactaaattgttc 989449  T
Q  144 actattccttacatgagagatcctt 168  Q
    |||||| ||||||||  ||||||||    
T  989450 actatttcttacatgcaagatcctt 989474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 2686408 - 2686299
Alignment:
Q  48 ttgggtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggttat---gaaggaatatggaaataaagagtcttggactaaatttttca 144  Q
    |||||||||||||||||||| || ||| |||  | ||||| |||||||||||||||   ||||||||||||||| ||||||||||||| |||||| ||||    
T  2686408 ttgggtgttttgagggattgtttgtgcttgatctgtggtgatgatgtttgggttattatgaaggaatatggaaaaaaagagtcttggaataaattgttca 2686309  T
Q  145 ctattcctta 154  Q
    ||||||||||    
T  2686308 ctattcctta 2686299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 2456249 - 2456320
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatgaga 161  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| | |  ||||||||||||||||    
T  2456249 gatgtttgggttatgaaggaatatggaaataaagactcttggactaaattgtaccatattccttacatgaga 2456320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 968629 - 968735
Alignment:
Q  48 ttgggtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcacta 147  Q
    |||||||| ||||||||||| || ||| ||| |   |||  |||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||    
T  968629 ttgggtgtgttgagggattgtttgtgcatgattatcggtcatgatgtttgggttatgaaggaacatggaaataaagagtcatggactaaattattcacta 968728  T
Q  148 ttcctta 154  Q
    || ||||    
T  968729 tttctta 968735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 1007423 - 1007520
Alignment:
Q  52 gtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactatt 149  Q
    ||||||| |||||||||||   ||||  || ||||| |||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  1007423 gtgtttttagggattgcttgaccgtgttttgtggtgatgatgtttgggtaatgaaggaatatggaaataacgagtcctggactaaattgttcactatt 1007520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 1022451 - 1022548
Alignment:
Q  52 gtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactatt 149  Q
    ||||||| |||||||||||   ||||  || ||||| |||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  1022451 gtgtttttagggattgcttgaccgtgttttgtggtgatgatgtttgggtaatgaaggaatatggaaataacgagtcatggactaaattgttcactatt 1022548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 47 - 146
Target Start/End: Complemental strand, 2696826 - 2696727
Alignment:
Q  47 tttgggtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcact 146  Q
    ||||||||| || |||||||||||  || ||| ||| | |  |||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||    
T  2696826 tttgggtgtgttaagggattgcttgggcttgatttccgatcatgatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgttcact 2696727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 997566 - 997623
Alignment:
Q  80 ttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaa 137  Q
    |||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||    
T  997566 ttctggtgatgttgtttgggtaatgaaggaatatggaaataaagagtcttggactaaa 997623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 1013956 - 1014013
Alignment:
Q  80 ttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaa 137  Q
    |||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||    
T  1013956 ttctggtgatgttgtttgggtaatgaaggaatatggaaataaagagtcttggactaaa 1014013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 1931206 - 1931137
Alignment:
Q  89 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 158  Q
    ||||||||||||||||| |||| ||||||||||||| || ||||||||||| ||||||||| ||||||||    
T  1931206 tgatgtttgggttatgatggaacatggaaataaagactcctggactaaattgttcactatttcttacatg 1931137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 13498224 - 13498273
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13498224 gatgtttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 9587233 - 9587161
Alignment:
Q  93 gtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatgagagatc 165  Q
    |||||| |||||||||||||||||||||||||| ||||||| ||||| | || ||||||||||||| ||||||    
T  9587233 gtttggattatgaaggaatatggaaataaagagccttggacaaaattgtacaatattccttacatgggagatc 9587161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 52 - 167
Target Start/End: Original strand, 956343 - 956458
Alignment:
Q  52 gtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattcc 151  Q
    ||||||| ||||||||||| ||| ||| || ||||   ||||||||| ||||||||||||||||||| ||||||||||||  |||||| |||| |||| |    
T  956343 gtgttttcagggattgcttgtgcatgatttttggttgcgatgtttggattatgaaggaatatggaaaaaaagagtcttggcataaattgttcattatttc 956442  T
Q  152 ttacatgagagatcct 167  Q
    | |||||  |||||||    
T  956443 tcacatgcaagatcct 956458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 48 - 139
Target Start/End: Original strand, 2459233 - 2459324
Alignment:
Q  48 ttgggtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    |||||||| ||||| |||||||| | | | | |||||||  || ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  2459233 ttgggtgtattgagtgattgcttgtccataatttctggtcatgttgtttggattatgaaggaatatggaaataaagagtcttggacaaaatt 2459324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 9608397 - 9608346
Alignment:
Q  88 ttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  9608397 ttgatgtttgggttatgaaggaatatggaaatatagattcttggactaaatt 9608346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 139
Target Start/End: Complemental strand, 1891156 - 1891066
Alignment:
Q  49 tgggtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||||| ||||||||||| || ||| ||  || ||||  |||||||||| ||||||||||| ||||||||||||| ||||||||||||||    
T  1891156 tgggtgtgttgagggattgtttgtgcctggtttttggtcatgatgtttggattatgaaggaacatggaaataaagactcttggactaaatt 1891066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 152
Target Start/End: Complemental strand, 2644413 - 2644351
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattcct 152  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||||||||| | ||||||||||    
T  2644413 gatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacactattcct 2644351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 152
Target Start/End: Complemental strand, 2659203 - 2659141
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattcct 152  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||||||||| | ||||||||||    
T  2659203 gatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacactattcct 2659141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 771550 - 771501
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  771550 gatgtttgggttatgaaggaatatggaaatacagactcttggactaaatt 771501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 1937073 - 1936972
Alignment:
Q  48 ttgggtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcacta 147  Q
    |||||||| ||||||||||| || ||| ||  || ||||  |||||||||||||||||||||||||  ||||||||| || ||| ||||||| |||||||    
T  1937073 ttgggtgtgttgagggattgtttgtgcatggtttttggttatgatgtttgggttatgaaggaatataaaaataaagaatcctggtctaaattgttcacta 1936974  T
Q  148 tt 149  Q
    ||    
T  1936973 tt 1936972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 1940631 - 1940562
Alignment:
Q  89 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 158  Q
    |||||||||||||||||||||| |||||||| |||| || ||||||||||| ||||||||| ||| ||||    
T  1940631 tgatgtttgggttatgaaggaacatggaaatcaagactcgtggactaaattgttcactatttcttgcatg 1940562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 2442039 - 2442095
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcact 146  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||||||| ||||||    
T  2442039 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 2442095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 2631358 - 2631406
Alignment:
Q  91 atgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||    
T  2631358 atgtttggattatgaaggaatatggaaatcaagagtcttggactaaatt 2631406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 7334290 - 7334215
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatgagagatc 165  Q
    ||||||||| | |||||||| || |||||||||||||||||||||||||| | |||||||||| || ||| |||||    
T  7334290 gatgtttggatcatgaaggactacggaaataaagagtcttggactaaattgtacactattcctaacctgaaagatc 7334215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 89 - 155
Target Start/End: Complemental strand, 7432106 - 7432040
Alignment:
Q  89 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttac 155  Q
    ||||||||||  |||||||||||||||||||||||| || ||||||||||| ||||| ||| |||||    
T  7432106 tgatgtttggagtatgaaggaatatggaaataaagaatcgtggactaaattgttcaccatttcttac 7432040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 7324482 - 7324433
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||||||| |||||||||| || ||||||||||||||||||||||||||    
T  7324482 gatgtttggattatgaaggactacggaaataaagagtcttggactaaatt 7324433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 37753396 - 37753347
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||||||| ||||| ||||||||||||| ||||||||||||||||||||    
T  37753396 gatgtttggattatggaggaatatggaaagaaagagtcttggactaaatt 37753347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 43991960 - 43992009
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  43991960 gatgtttggattatgaaggaatatggaaatatagagtcttggaccaaatt 43992009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 2476634 - 2476702
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 158  Q
    ||||||||| |||||||  | ||||||||||||||||||||||||||||| | |||| ||||| |||||    
T  2476634 gatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacactgttcctaacatg 2476702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 7942485 - 7942553
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 158  Q
    ||||||||| |||||||||| ||||| |||||||||||||||| |||||| | || | |||||||||||    
T  7942485 gatgtttggattatgaaggagtatggtaataaagagtcttggattaaattgtacaatgttccttacatg 7942553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 783850 - 783775
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatgagagatc 165  Q
    ||||||||| ||||||||||||||||||||| | || | ||||||||||| |  ||| ||||||||||| ||||||    
T  783850 gatgtttggattatgaaggaatatggaaatacaaagccatggactaaattgtatactgttccttacatgggagatc 783775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 152
Target Start/End: Original strand, 2502148 - 2502210
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattcct 152  Q
    ||||||||| |||||||||| ||||||||||| |||| |||||||||| | | ||||||||||    
T  2502148 gatgtttggattatgaaggagtatggaaataaggagttttggactaaactgtacactattcct 2502210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 12133097 - 12133151
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttca 144  Q
    |||||||||||||||| ||| |||||||||| |||||| ||||||||||| ||||    
T  12133097 gatgtttgggttatgagggagtatggaaatagagagtcgtggactaaattgttca 12133151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 44001605 - 44001655
Alignment:
Q  100 ttatgaaggaatatggaaataaagagtcttggactaaatttttcactattc 150  Q
    |||||||||||||||||| ||||||||||||||||||| | | ||||||||    
T  44001605 ttatgaaggaatatggaattaaagagtcttggactaaactgtacactattc 44001655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 754660 - 754611
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||||||| |||||||||| |||||| || |||||||||||||||||||    
T  754660 gatgtttggattatgaaggagtatggagatcaagagtcttggactaaatt 754611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 1438003 - 1438044
Alignment:
Q  98 ggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||||||||||||||||||||||||| ||||||| ||||||    
T  1438003 ggttatgaaggaatatggaaataaagactcttggattaaatt 1438044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 9562036 - 9561987
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||||||| ||||||| || ||||||||| |||||||||||||||||||    
T  9562036 gatgtttggattatgaatgagtatggaaatcaagagtcttggactaaatt 9561987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 23197014 - 23197079
Alignment:
Q  92 tgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacat 157  Q
    ||||||| | |||||||||||||||||| |||| |||||||||||||| ||   ||||||||||||    
T  23197014 tgtttggctgatgaaggaatatggaaatgaagaatcttggactaaattgtttcgtattccttacat 23197079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 2492083 - 2492131
Alignment:
Q  91 atgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    |||||||| |||||||||| |||||||||  ||||||||||||||||||    
T  2492083 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaatt 2492131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 378
Target Start/End: Original strand, 3746229 - 3746295
Alignment:
Q  311 tccagaagtctgtggtgaaagtttaatatctccatcttctctatgctaggatgtagatgtggtgctat 378  Q
    |||||||||||||| ||| ||||||||||| |||| |||| | | ||||||||||| |||||||||||    
T  3746229 tccagaagtctgtgttgagagtttaatatcaccatgttct-tttactaggatgtagttgtggtgctat 3746295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 7427650 - 7427607
Alignment:
Q  96 tgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||    
T  7427650 tgggttatgatggaatatggaaataaagagtcgtgggctaaatt 7427607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 139
Target Start/End: Original strand, 12218033 - 12218076
Alignment:
Q  96 tgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||    
T  12218033 tgggttatgatggaatatggaaataaagagtcgtgggctaaatt 12218076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 13479584 - 13479646
Alignment:
Q  96 tgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 158  Q
    ||||| ||||| |||||||||| | ||||||||||||| ||||| ||||||||| || |||||    
T  13479584 tgggtcatgaaagaatatggaattcaagagtcttggacaaaattgttcactatttctaacatg 13479646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 746422 - 746385
Alignment:
Q  102 atgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  746422 atgaaggagtatggaaatcaagagtcttggactaaatt 746385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 145
Target Start/End: Original strand, 899967 - 900063
Alignment:
Q  51 ggtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggt--tatgaaggaatatggaaataaagagtcttggactaaatttttcac 145  Q
    ||||| |||||||| ||||| ||| ||| |||| ||  ||||||||||||  |||||| |||||| |||| |||||||||| || |||||| |||||    
T  899967 ggtgtgttgagggaatgcttgtgcatgatttcttgtcatgatgtttgggttatatgaatgaatattgaaacaaagagtcttcgattaaattgttcac 900063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 7430587 - 7430538
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||||||| |||||||| | |||||||||||| |||||| |||||||||    
T  7430587 gatgtttggattatgaagaagtatggaaataaaaagtcttagactaaatt 7430538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 7443027 - 7442982
Alignment:
Q  91 atgtttgggttatgaaggaatatggaaataaagagtcttggactaa 136  Q
    |||||||| | |||||||| ||||||||| ||||||||||||||||    
T  7443027 atgtttggatcatgaaggagtatggaaatcaagagtcttggactaa 7442982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 9565880 - 9565831
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||||||| |||||||||| || ||| || |||||||||||||||||||    
T  9565880 gatgtttggattatgaaggagtacggagatcaagagtcttggactaaatt 9565831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 37757777 - 37757744
Alignment:
Q  100 ttatgaaggaatatggaaataaagagtcttggac 133  Q
    ||||||||||||||||||| ||||||||||||||    
T  37757777 ttatgaaggaatatggaaacaaagagtcttggac 37757744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 768379 - 768331
Alignment:
Q  91 atgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    |||||||| ||||||| || || |||||| |||||||||||||||||||    
T  768379 atgtttggattatgaatgagtacggaaatgaagagtcttggactaaatt 768331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 385
Target Start/End: Complemental strand, 1889380 - 1889348
Alignment:
Q  353 atgctaggatgtagatgtggtgctatgtcactt 385  Q
    ||||||| |||||||||||||||||||||||||    
T  1889380 atgctagaatgtagatgtggtgctatgtcactt 1889348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 385
Target Start/End: Original strand, 11081740 - 11082108
Alignment:
Q  20 aggggtggatgttggtgacttgtcggttttgggtgttttgagggattgcttatgcgtgac---ttctggtgttgatgtttgggttatgaaggaatatgga 116  Q
    ||||||||||||  || ||||||||| |||||||||||||||||||||||| || |||||   | || ||| ||||||||||||||||||||| ||||||    
T  11081740 aggggtggatgtgcgtaacttgtcggctttgggtgttttgagggattgcttgtgtgtgacgactactagtgatgatgtttgggttatgaaggagtatgga 11081839  T
Q  117 aataaagagtcttggactaaatttttcactattccttacatgagagatccttctaaacctaaggcctttgcgaaggcattgtatacttttgaggatgatc 216  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| | | | |||| | |||||| | ||||  |||||||||||||    
T  11081840 aataaagagtcttggactaaattgtttactattccttacatgagagatccttctaaacgtgatgtctttcccaaggcagtatatatatttgaggatgatc 11081939  T
Q  217 aagtgttgctgaagtttatgaatgatattgacttgaatttggttctttacaaccccaggagcagtaccttgaaggctattaactttaaatatactccaga 316  Q
    |||||||| ||||||||||||||||| |||||||||||||| |||||||||| || |||||| |||| |||||||||| ||| |||||| ||| ||||||    
T  11081940 aagtgttgttgaagtttatgaatgattttgacttgaatttgattctttacaatcctaggagccgtactttgaaggctaataattttaaagatattccaga 11082039  T
Q  317 agtctgtggtgaaagtttaatatctccatcttctctatgctaggatgtagatgtggtgctatgtcactt 385  Q
    |||||||| |||||||||| |||| || | ||||||||  || ||||||||||||||||| ||||||||    
T  11082040 agtctgtgttgaaagtttagtatcaccttgttctctatattaagatgtagatgtggtgctttgtcactt 11082108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 23766923 - 23766854
Alignment:
Q  80 ttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactatt 149  Q
    |||||||  |||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  23766923 ttctggtaatgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttcactatt 23766854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 23816771 - 23816702
Alignment:
Q  80 ttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactatt 149  Q
    |||||||  |||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  23816771 ttctggtaatgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttcactatt 23816702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 23769698 - 23769629
Alignment:
Q  89 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 158  Q
    |||||||||| |||||||||||||||| ||||||| ||||||||||||||| |||||||| |||| ||||    
T  23769698 tgatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttcactatacctttcatg 23769629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 23819546 - 23819477
Alignment:
Q  89 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 158  Q
    |||||||||| |||||||||||||||| ||||||| ||||||||||||||| |||||||| |||| ||||    
T  23819546 tgatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttcactatacctttcatg 23819477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 20292995 - 20293044
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  20292995 gatgtttggattatgaaggaatatggaattaaagagtcttggactaaatt 20293044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 23732166 - 23732230
Alignment:
Q  89 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattcctt 153  Q
    |||||||||| |||||||||||||||| ||||||| |||||||| |||| | |||||||||||||    
T  23732166 tgatgtttggattatgaaggaatatgggaataaagcgtcttggaataaactgttcactattcctt 23732230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 3181716 - 3181766
Alignment:
Q  89 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    |||||||||| |||||||||||||||||||| |||||||||||| ||||||    
T  3181716 tgatgtttggcttatgaaggaatatggaaatgaagagtcttggattaaatt 3181766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 20301443 - 20301492
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||||||| ||||||||||||||| || |||||||||||||||||||||    
T  20301443 gatgtttggattatgaaggaatatgcaattaaagagtcttggactaaatt 20301492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 20305856 - 20305905
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||| ||| |||||||||||||||||| |||||||||||||||||||||    
T  20305856 gatgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20305905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 20310260 - 20310309
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||| ||| |||||||||||||||||| |||||||||||||||||||||    
T  20310260 gatgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20310309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 23861078 - 23861009
Alignment:
Q  89 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 158  Q
    |||||||||| | |||||||||||||| |  |||| ||||||||||||||| ||||||||||||| ||||    
T  23861078 tgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcctttcatg 23861009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 1427751 - 1427679
Alignment:
Q  83 tggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttac 155  Q
    ||||| |||||||||||||||||| || |||||||||| ||||||||||| |||| | ||||| ||| |||||    
T  1427751 tggtgatgatgtttgggttatgaaagagtatggaaatacagagtcttggattaaactgttcacaatttcttac 1427679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 41973522 - 41973474
Alignment:
Q  89 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaa 137  Q
    |||||||||||||||||||||||||| |||||||| ||| |||||||||    
T  41973522 tgatgtttgggttatgaaggaatatgaaaataaagtgtcatggactaaa 41973474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 23764312 - 23764243
Alignment:
Q  89 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 158  Q
    |||||||||| | |||||||||||||| |  |||| ||||||||||| ||| ||||||||||||| ||||    
T  23764312 tgatgtttggataatgaaggaatatgggatgaaagcgtcttggactacattgttcactattcctttcatg 23764243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 23814145 - 23814076
Alignment:
Q  89 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 158  Q
    |||||||||| | |||||||||||||| |  | || ||||||||||||||| ||||||||||||| ||||    
T  23814145 tgatgtttggataatgaaggaatatgggatgacagcgtcttggactaaattgttcactattcctttcatg 23814076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 6401817 - 6401768
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||||||| |||||||||||| || ||||| |||||| |||||||||||    
T  6401817 gatgtttggcttatgaaggaatttgaaaatagagagtcatggactaaatt 6401768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 89141 - 89211
Alignment:
Q  88 ttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 158  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| | || | |||||||||||    
T  89141 ttgatatttgggttatgaaggaatatggaaataaagagtcttggactaaattgtacaatgttccttacatg 89211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 39298975 - 39299045
Alignment:
Q  88 ttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 158  Q
    |||||||||||||| ||||||||| ||||||||||||||| ||||||||||||| || | |||||||||||    
T  39298975 ttgatgtttgggttttgaaggaatgtggaaataaagagtcctggactaaattttacagtgttccttacatg 39299045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 167
Target Start/End: Complemental strand, 1078211 - 1078134
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatgagagatcct 167  Q
    |||||||||||||||||||| |||||||||| |||||| ||||||||||| |||| | || |||||| | ||||||||    
T  1078211 gatgtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatcct 1078134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 1421221 - 1421171
Alignment:
Q  89 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    |||||||||| ||||||||||||| ||||||||||||||||||| ||||||    
T  1421221 tgatgtttggcttatgaaggaatacggaaataaagagtcttggattaaatt 1421171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 3927063 - 3927108
Alignment:
Q  94 tttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    |||||||||||||||| |||||||||||| | ||||||||||||||    
T  3927063 tttgggttatgaaggattatggaaataaaaattcttggactaaatt 3927108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 22672188 - 22672110
Alignment:
Q  80 ttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 158  Q
    ||||||||  || |||||||| |||||||||||||||||||| || |||||||||||||| ||||||||| ||||||||    
T  22672188 ttctggtgacgacgtttgggtaatgaaggaatatggaaataaggaatcttggactaaattgttcactatttcttacatg 22672110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 80 - 167
Target Start/End: Complemental strand, 20019833 - 20019746
Alignment:
Q  80 ttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatgagagatcct 167  Q
    |||||||  |||||||||||| |||||||||||||||| | ||||||||||||||||||| |||||| || || |||||  |||||||    
T  20019833 ttctggtaatgatgtttgggtcatgaaggaatatggaattcaagagtcttggactaaattgttcactctttctaacatgcaagatcct 20019746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 11032910 - 11032959
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||||||| | ||||||||||| ||||||||||||||||||| ||||||    
T  11032910 gatgtttggctcatgaaggaatacggaaataaagagtcttggattaaatt 11032959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 20016224 - 20016180
Alignment:
Q  102 atgaaggaatatggaaataaagagtcttggactaaatttttcact 146  Q
    |||||||||||||||| | ||||||||||||||||||| ||||||    
T  20016224 atgaaggaatatggaattcaagagtcttggactaaattgttcact 20016180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 27471375 - 27471335
Alignment:
Q  358 aggatgtagatgtggtgctatgtcacttaaacattagattc 398  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  27471375 aggatgtagatgtggtgctatgtgacttaaactttagattc 27471335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 55419792 - 55419843
Alignment:
Q  100 ttatgaaggaatatggaaataaagagtcttggactaaatttttcactattcc 151  Q
    |||||||||  |||||||||||||| |||||||||||||| || ||||||||    
T  55419792 ttatgaaggtttatggaaataaagattcttggactaaattgtttactattcc 55419843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 19727871 - 19727948
Alignment:
Q  80 ttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacat 157  Q
    |||||||| |||||||||||||||||  ||||||| |||||||||||| ||||||||| | ||||||||| |||||||    
T  19727871 ttctggtgatgatgtttgggttatgacagaatatgcaaataaagagtcatggactaaactgttcactatttcttacat 19727948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 51381507 - 51381438
Alignment:
Q  89 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 158  Q
    |||| ||||| ||||||| |||||||||||| ||||||||||||||||||| |||| |||||||||||||    
T  51381507 tgatatttggattatgaaagaatatggaaatgaagagtcttggactaaattgttcagtattccttacatg 51381438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 23896190 - 23896138
Alignment:
Q  88 ttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattt 140  Q
    ||||||||||| ||||||||||||||||||||||||||||||||  |||||||    
T  23896190 ttgatgtttggcttatgaaggaatatggaaataaagagtcttgggttaaattt 23896138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 24629262 - 24629213
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||||||| ||||||||||||| ||||||||||||||||||| ||||||    
T  24629262 gatgtttggcttatgaaggaatacggaaataaagagtcttggattaaatt 24629213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 132
Target Start/End: Complemental strand, 24246549 - 24246506
Alignment:
Q  89 tgatgtttgggttatgaaggaatatggaaataaagagtcttgga 132  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||    
T  24246549 tgatgtttggcttatgaaagaatacggaaataaagagtcttgga 24246506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 25478863 - 25478914
Alignment:
Q  88 ttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||||||||| ||||||||||||| || |||||||| ||||||| ||||||    
T  25478863 ttgatgtttggcttatgaaggaatacggtaataaagaatcttggattaaatt 25478914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 24242909 - 24242859
Alignment:
Q  89 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    |||||||||| ||||||||  ||| ||||||||||||||||||| ||||||    
T  24242909 tgatgtttggcttatgaagatatacggaaataaagagtcttggattaaatt 24242859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 51782798 - 51782848
Alignment:
Q  89 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    |||||||||| |||||||||||||||||||| || | ||||||| ||||||    
T  51782798 tgatgtttggattatgaaggaatatggaaatgaacaatcttggaataaatt 51782848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 51858605 - 51858655
Alignment:
Q  89 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    |||||||||| | ||||||||||||||||||  ||| ||||||||||||||    
T  51858605 tgatgtttggatcatgaaggaatatggaaatgtagaatcttggactaaatt 51858655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 24634857 - 24634817
Alignment:
Q  89 tgatgtttgggttatgaaggaatatggaaataaagagtctt 129  Q
    |||||||||| ||||||||||||| |||| |||||||||||    
T  24634857 tgatgtttggcttatgaaggaatacggaattaaagagtctt 24634817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 36577366 - 36577415
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  36577366 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaatt 36577415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 33026657 - 33026702
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggacta 135  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||    
T  33026657 gatgtttgggttatgaagcaatatggaaataaaaagtcttggacta 33026702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 7160805 - 7160730
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatgagagatc 165  Q
    ||||||||| |||||||||| ||||||||||| || |||||||||||||| |||  | ||||| |||||| |||||    
T  7160805 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtcttcctcacatgaaagatc 7160730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 7168738 - 7168667
Alignment:
Q  93 gtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatgagagat 164  Q
    |||||| |||||||||||||||||||||| || |||||||||||||| |||    ||||||||||| |||||    
T  7168738 gtttggcttatgaaggaatatggaaataacgattcttggactaaattgttccgagttccttacatgggagat 7168667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 33038158 - 33038205
Alignment:
Q  88 ttgatgtttgggttatgaaggaatatggaaataaagagtcttggacta 135  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||||||||    
T  33038158 ttgatgtttggattatgaaggaatatggaaacaaaaagtcttggacta 33038205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 164
Target Start/End: Complemental strand, 7156243 - 7156169
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatgagagat 164  Q
    ||||||||| |||||||||| ||||||||| |||| |||||| ||||||| |||  | ||||||||||| |||||    
T  7156243 gatgtttggcttatgaaggagtatggaaatgaagattcttgggctaaattgttccgtgttccttacatgggagat 7156169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 6538844 - 6538888
Alignment:
Q  100 ttatgaaggaatatggaaataaagagtcttggactaaatttttca 144  Q
    |||||||||| |||||||||||||| |||||||||||||| ||||    
T  6538844 ttatgaaggagtatggaaataaagattcttggactaaattgttca 6538888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 7174424 - 7174356
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 158  Q
    ||||| ||| |||||||||||||||||||| |||| |||||||||| ||| |||  | |||||||||||    
T  7174424 gatgtctggcttatgaaggaatatggaaatcaagattcttggactagattgttccgtgttccttacatg 7174356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 33020314 - 33020358
Alignment:
Q  91 atgtttgggttatgaaggaatatggaaataaagagtcttggacta 135  Q
    |||| ||| ||||||||||||||||||||||| ||||||||||||    
T  33020314 atgtgtggattatgaaggaatatggaaataaaaagtcttggacta 33020358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 34570520 - 34570471
Alignment:
Q  90 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||||||||||||| ||||||||||||||||| ||| ||  ||||||||    
T  34570520 gatgtttgggttatggaggaatatggaaataaaaagtattcaactaaatt 34570471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 32382 - 32331
Alignment:
Q  88 ttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  32382 ttgatgtttggcttatgaaggaatatggaaataaagactcttggattaaatt 32331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 40433 - 40383
Alignment:
Q  89 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||| ||||||    
T  40433 tgatgtttggcttatgaaggaatatgaaaataaagactcttggattaaatt 40383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 830 - 782
Alignment:
Q  89 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaa 137  Q
    |||||||||||||||||||||||||| |||||||| ||| |||||||||    
T  830 tgatgtttgggttatgaaggaatatgaaaataaagtgtcatggactaaa 782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 370833 - 370777
Alignment:
Q  93 gtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactatt 149  Q
    ||||||||||||||| | |||||||||||||| |||||||||||||| |||| ||||    
T  370833 gtttgggttatgaagaattatggaaataaagattcttggactaaattgttcaatatt 370777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 24417536 - 24417488
Alignment:
Q  91 atgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||||    
T  24417536 atgtttggattatgaaagaatatggaaataaagaatcttggactaaatt 24417488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 1442153 - 1442098
Alignment:
Q  96 tgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattcc 151  Q
    |||||||||||||| ||||||| |||||| |||||||||||||| |||||| ||||    
T  1442153 tgggttatgaaggattatggaattaaagattcttggactaaattgttcactgttcc 1442098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 19119065 - 19119112
Alignment:
Q  92 tgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||||| | |||||||||||||||||| |||||||||||||||||||    
T  19119065 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaatt 19119112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 19126359 - 19126406
Alignment:
Q  92 tgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||||| | |||||||||||||||||| |||||||||||||||||||    
T  19126359 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaatt 19126406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 9819876 - 9819830
Alignment:
Q  94 tttgggttatgaaggaatatggaaataaagagtcttggactaaattt 140  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||||||    
T  9819876 tttggcttatgaaggaatatggaaatagagactcttggactaaattt 9819830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 176345 - 176395
Alignment:
Q  101 tatgaaggaatatggaaataaagagtcttggactaaatttttcactattcc 151  Q
    |||||| || |||||||||||||| |||||||||||||| |||||| ||||    
T  176345 tatgaatgattatggaaataaagattcttggactaaattgttcactcttcc 176395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 7564798 - 7564748
Alignment:
Q  94 tttgggttatgaaggaatatggaaataaagagtcttggactaaatttttca 144  Q
    |||||||||||||||| |||||||| || || |||||||||||||| ||||    
T  7564798 tttgggttatgaaggattatggaaacaaggattcttggactaaattgttca 7564748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 9825562 - 9825516
Alignment:
Q  94 tttgggttatgaaggaatatggaaataaagagtcttggactaaattt 140  Q
    ||||| ||||||||||||||||||||| | | |||||||||||||||    
T  9825562 tttggcttatgaaggaatatggaaatagaaactcttggactaaattt 9825516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 1459588 - 1459543
Alignment:
Q  94 tttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||||||||||| || | |||||||||||| ||||||||||||||    
T  1459588 tttgggttatgaaagattttggaaataaagaatcttggactaaatt 1459543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 1470970 - 1470925
Alignment:
Q  94 tttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||||||||||| || |||||||||||||| |||||| |||||||    
T  1470970 tttgggttatgaaagattatggaaataaagattcttggtctaaatt 1470925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 9703933 - 9703888
Alignment:
Q  94 tttgggttatgaaggaatatggaaataaagagtcttggactaaatt 139  Q
    ||||| ||||||||||||||||||||| ||| | ||||||||||||    
T  9703933 tttggcttatgaaggaatatggaaatagagatttttggactaaatt 9703888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1004 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 138
Target Start/End: Original strand, 2144 - 2191
Alignment:
Q  91 atgtttgggttatgaaggaatatggaaataaagagtcttggactaaat 138  Q
    ||||||||| |||||||||||||||||||  |||||||||||||||||    
T  2144 atgtttgggctatgaaggaatatggaaatgtagagtcttggactaaat 2191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 138
Target Start/End: Original strand, 4639 - 4686
Alignment:
Q  91 atgtttgggttatgaaggaatatggaaataaagagtcttggactaaat 138  Q
    ||||||||| |||||||||||||||||||  |||||||||||||||||    
T  4639 atgtttgggctatgaaggaatatggaaatgtagagtcttggactaaat 4686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University