View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12913_high_16 (Length: 448)
Name: NF12913_high_16
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12913_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 437
Target Start/End: Original strand, 49771838 - 49772255
Alignment:
| Q |
18 |
gataatacatgaataccttttcattgcagattccacctgattcaacagaaccattaggagtgcagatcttgaagtcgcgtgggattttccctgaagcata |
117 |
Q |
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| T |
49771838 |
gataatacatgaataccttttcattgcagattccacctgattcaacagaaccattaggagtgcagatcttgaagtcgcgtgggattttccctgaagcata |
49771937 |
T |
|
| Q |
118 |
ctggtattggattggagttggagcttccattggatacatgttactattcaacttccttttccctctagccttacattatcttgactgtaagtatccaata |
217 |
Q |
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| T |
49771938 |
ctggtattggattggagttggagcttccattggatacatgttactattcaacttccttttccctctagccttacattatcttgactctaagtatccaata |
49772037 |
T |
|
| Q |
218 |
tattatatgtggttgtcaggttataaaattgatgtagttctcttagtaacaaatgaaacattttattgcagcatttggtaaaccgcaggctttaatatca |
317 |
Q |
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| T |
49772038 |
tattatatgtggttgtcaggttataaaattga--tagttctcttggtaacaaatgaaacattttattgcagcatttggtaaaccgcaggctttaatatca |
49772135 |
T |
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| Q |
318 |
gaagaagcattggctgagagaaatgctgccactgctggaagcaaacagattattgaactgtcgcctaaattggaatgttcgtcaggtgagttacaattag |
417 |
Q |
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| T |
49772136 |
gaagaagcattggctgagagaaatgctgccactgctggaagcaaacagattattgaactgtcgcctaaattggaatgttcgtcaggtgagttacaattag |
49772235 |
T |
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| Q |
418 |
cttactaaacttcttcctat |
437 |
Q |
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| T |
49772236 |
cttactaaacttcttcctat |
49772255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 75 - 181
Target Start/End: Complemental strand, 3827938 - 3827832
Alignment:
| Q |
75 |
gagtgcagatcttgaagtcgcgtgggattttccctgaagcatactggtattggattggagttggagcttccattggatacatgttactattcaacttcct |
174 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3827938 |
gagtgcagatcttgaagtagcgtgggattttccctgaagcatactggtattgcattagagttggagcttccattggatacatgttacaattcaacttcct |
3827839 |
T |
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| Q |
175 |
tttccct |
181 |
Q |
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||||||| |
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| T |
3827838 |
tttccct |
3827832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 270 - 366
Target Start/End: Complemental strand, 3825781 - 3825686
Alignment:
| Q |
270 |
atgaaacattttattgcagcatttggtaaaccgcaggctttaatatcagaagaagcattggctgagagaaatgctgccactgctggaagcaaacaga |
366 |
Q |
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| T |
3825781 |
atgaaacatttg-ttgcagcatttggtaaaccacagacattaatatcataagaagcattggctgagggaaatgctgccactgctggaaacaaacaga |
3825686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 325
Target Start/End: Complemental strand, 3826459 - 3826373
Alignment:
| Q |
238 |
ttataaaattgatgtagttctcttagtaacaaatgaaacattttattgcagcatttggtaaaccgcaggctttaatatcagaagaagc |
325 |
Q |
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|||| ||| |||||||||||||| ||||||| ||||||||| || ||||||||||||||||||| | |||||||||||| |||||| |
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| T |
3826459 |
ttatcaaactgatgtagttctctaagtaacatatgaaacatgtt-ttgcagcatttggtaaaccacgtactttaatatcagcagaagc |
3826373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 2149797 - 2149756
Alignment:
| Q |
102 |
ttttccctgaagcatactggtattggattggagttggagctt |
143 |
Q |
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| T |
2149797 |
ttttccctcaagcttattggtattggattggagttggagctt |
2149756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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