View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12913_high_2 (Length: 719)

Name: NF12913_high_2
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12913_high_2
NF12913_high_2
[»] chr7 (1 HSPs)
chr7 (9-704)||(25678106-25678818)


Alignment Details
Target: chr7 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 9 - 704
Target Start/End: Complemental strand, 25678818 - 25678106
Alignment:
Q  9 acatcatcatataggtatacatatactacttgaataaacccnnnnnnnnnc---atagggatcatataaacccnnnnnnnnnnnncgatacgaataaagt 105  Q
    |||||||||||||||||||||||||||||||||||||||||         |   |||||||||||||||||||            |||||||||||||||    
T  25678818 acatcatcatataggtatacatatactacttgaataaaccctttttttttcttcatagggatcatataaaccctttttgtttta-cgatacgaataaagt 25678720  T
Q  106 tattaaaacaagaacaaagggtactaaaatcgagttacagaacttgacccaaaaaatcaatnnnnnnntcgagttacgag---------------ttgct 190  Q
    ||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||       ||||||||| |                ||||     
T  25678719 tatgaaaacaagtacaaagggtactaaaatcgagttacagaagttgacgcaaaaaataaatgaaaaaatcgagttacaaaagaaaaaagtacaaattgcg 25678620  T
Q  191 aactaacttcgttttagattgtcttaaataatttacttttaaaaatgtaacctcaagggtttaaacttcaaatcctcgaggacagttgaaaaatgactat 290  Q
    ||| ||||||||| || ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  25678619 aaccaacttcgttctaaattgtcttaaataatttacatttaaaattgtaacctcaagggtttaaacttcaaatccttgagggcagttgaaaaatgactat 25678520  T
Q  291 tattgtcttagaattgaagatttannnnnnnnnnnnnnnnnacagatgtggatcatatggggatgcttctcttgccatgtatgaaaacatggtgcaaatg 390  Q
    ||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25678519 tattgtcttagaattgaagatttatttttctttttctttttacagatgtggatcatatggggatgcttctcttgccatgtatgaaaacatggtgcaaatg 25678420  T
Q  391 agtgcaataagtgactctagagctgacttctatggaaaaatgattgagagaaccaataataacaacattaatatccagggtcatagtattttccaagtgg 490  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  25678419 agttcaataagtgactctagagctgacttctatggaaaaatgattgagagaaccaataataacatcattaatatccagggtcatagtattttccaaatgg 25678320  T
Q  491 attcatccaattttagagaactatcaacaacaaaagtccatgaaccaaatgataatttcctctcattttgtggccatgaatctttaagagatgatctaca 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25678319 attcatccaattttagagaactatcaacaacaaaagtccatgaaccaaatgataatttcctctcattttgtggccatgaatctttaagagatgatctaca 25678220  T
Q  591 agttcaaccaagagcacaagatctcatttcgaacgataacttgcctgcaaatcaagtggaagaacttaagacaatgaaaagaaaagcttcagatatggat 690  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25678219 agttcaaccaagagcacaagatctcatttcgaacgataacttgcctgcaaatcaagtggaagaacttaagacaatgaaaagaaaagcttcagatatggat 25678120  T
Q  691 cttgagttggatct 704  Q
    ||||||||||||||    
T  25678119 cttgagttggatct 25678106  T

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