View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12913_high_20 (Length: 407)

Name: NF12913_high_20
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12913_high_20
NF12913_high_20
[»] chr3 (15 HSPs)
chr3 (250-339)||(6939308-6939397)
chr3 (16-107)||(6935143-6935233)
chr3 (118-188)||(6939013-6939083)
chr3 (261-373)||(6526797-6526909)
chr3 (261-373)||(6848377-6848489)
chr3 (39-113)||(50302103-50302176)
chr3 (31-94)||(6525438-6525500)
chr3 (188-224)||(6526944-6526980)
chr3 (34-94)||(6799224-6799283)
chr3 (31-94)||(6410638-6410700)
chr3 (185-224)||(6558187-6558226)
chr3 (188-227)||(6789001-6789040)
chr3 (261-335)||(6558078-6558152)
chr3 (118-159)||(6549838-6549879)
chr3 (188-217)||(6848532-6848561)
[»] scaffold0425 (2 HSPs)
scaffold0425 (261-373)||(11504-11616)
scaffold0425 (188-224)||(11651-11687)


Alignment Details
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 250 - 339
Target Start/End: Original strand, 6939308 - 6939397
Alignment:
Q  250 tgaaaactggagtaaaaggccacatgacatcctcaccgtgtaattgattgatgcaatttatccagcgccttcttttctcatgtctcgcat 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6939308 tgaaaactggagtaaaaggccacatgacatcctcaccgtgtaattgattgatgcaatttatccagcgccttcttttctcatgtctcgcat 6939397  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 6935143 - 6935233
Alignment:
Q  16 ctacaatgagattcagattttgttgaagttcaaaaatataaatttggacaaaattgccacaattctaatcaaattcacccgaaattcaaaca 107  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||    
T  6935143 ctacaatgtgattcaaattttgttgaagttcaaaaatataaatttggacaaaattgccacaattct-atcaaattcacccggaatccaaaca 6935233  T

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Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 6939013 - 6939083
Alignment:
Q  118 taaattagagtgatgccttgcagaatggttctgtgttacattgattgattataacaggccagtcttattga 188  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6939013 taaattagagtgatgccttccagaatggttctgtgttacattgattgattataacaggccagtcttattga 6939083  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 261 - 373
Target Start/End: Complemental strand, 6526909 - 6526797
Alignment:
Q  261 gtaaaaggccacatgacatcctcaccgtgtaattgattgatgcaatttatccagcgccttcttttctcatgtctcgcattttctgagccgacacaaaaag 360  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||| || || || |||||||||||| |||||   ||| ||| |  ||||||| |||    
T  6526909 gtaaaaggccacatgacatcctcaccatgtaattggttgatgcaattaattcatcggcttcttttctcaagtctcatgtttcctgggaagacacaagaag 6526810  T
Q  361 aaaagcagacaat 373  Q
    |||| ||||||||    
T  6526809 aaaaacagacaat 6526797  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 261 - 373
Target Start/End: Complemental strand, 6848489 - 6848377
Alignment:
Q  261 gtaaaaggccacatgacatcctcaccgtgtaattgattgatgcaatttatccagcgccttcttttctcatgtctcgcattttctgagccgacacaaaaag 360  Q
    ||||||||||||||| |||||||||| |||||||| ||||||||||| || || || |||||||||||| ||||||  ||| ||| |  ||||||| |||    
T  6848489 gtaaaaggccacatggcatcctcaccatgtaattggttgatgcaattaattcatcggcttcttttctcaagtctcgtgtttcctgggaagacacaagaag 6848390  T
Q  361 aaaagcagacaat 373  Q
    |||| ||||||||    
T  6848389 aaaaacagacaat 6848377  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 50302176 - 50302103
Alignment:
Q  39 tgaagttcaaaaatataaatttggacaaaattgccacaattctaatcaaattcacccgaaattcaaacatgcaca 113  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||| || ||  ||||||||||||    
T  50302176 tgaagttcaaaaatataaattttgacaaaattgccacaattc-aatcaaattcacacggaacccaaacatgcaca 50302103  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 6525500 - 6525438
Alignment:
Q  31 gattttgttgaagttcaaaaatataaatttggacaaaattgccacaattctaatcaaattcacc 94  Q
    |||||||||||||||||||| ||||||||| ||||||||| |||| ||||| ||||||||||||    
T  6525500 gattttgttgaagttcaaaagtataaattttgacaaaattaccacgattct-atcaaattcacc 6525438  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 6526980 - 6526944
Alignment:
Q  188 acaacaaagtggcatgtcattcaattttttatcactt 224  Q
    |||||||||||||||||||||||||||||||||||||    
T  6526980 acaacaaagtggcatgtcattcaattttttatcactt 6526944  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 6799283 - 6799224
Alignment:
Q  34 tttgttgaagttcaaaaatataaatttggacaaaattgccacaattctaatcaaattcacc 94  Q
    ||||||||||||||||| || |||||| ||||||||| |||||||||| ||||||||||||    
T  6799283 tttgttgaagttcaaaagtacaaattttgacaaaattaccacaattct-atcaaattcacc 6799224  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 6410700 - 6410638
Alignment:
Q  31 gattttgttgaagttcaaaaatataaatttggacaaaattgccacaattctaatcaaattcacc 94  Q
    |||||||||||| ||||||| ||||||||| |||||||||  ||||||||| ||||||||||||    
T  6410700 gattttgttgaaattcaaaagtataaattttgacaaaattatcacaattct-atcaaattcacc 6410638  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 6558226 - 6558187
Alignment:
Q  185 ttgacaacaaagtggcatgtcattcaattttttatcactt 224  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  6558226 ttgacaacaaggtggcatgtcattcaattttttatcactt 6558187  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 6789040 - 6789001
Alignment:
Q  188 acaacaaagtggcatgtcattcaattttttatcacttctt 227  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  6789040 acaacaaagtggcatgtcattcaattttttatgacttctt 6789001  T

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Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 335
Target Start/End: Complemental strand, 6558152 - 6558078
Alignment:
Q  261 gtaaaaggccacatgacatcctcaccgtgtaattgattgatgcaatttatccagcgccttcttttctcatgtctc 335  Q
    |||||||||||||||||||||||||| |||||||  ||||||||| | || || || ||| |||||||| |||||    
T  6558152 gtaaaaggccacatgacatcctcaccatgtaatttgttgatgcaagtaattcatcggctttttttctcaagtctc 6558078  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 6549879 - 6549838
Alignment:
Q  118 taaattagagtgatgccttgcagaatggttctgtgttacatt 159  Q
    |||||| ||||  |||||||||||||||||||||||||||||    
T  6549879 taaattggagtagtgccttgcagaatggttctgtgttacatt 6549838  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 217
Target Start/End: Complemental strand, 6848561 - 6848532
Alignment:
Q  188 acaacaaagtggcatgtcattcaatttttt 217  Q
    ||||||||||||||||||||||||||||||    
T  6848561 acaacaaagtggcatgtcattcaatttttt 6848532  T

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Target: scaffold0425 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 261 - 373
Target Start/End: Complemental strand, 11616 - 11504
Alignment:
Q  261 gtaaaaggccacatgacatcctcaccgtgtaattgattgatgcaatttatccagcgccttcttttctcatgtctcgcattttctgagccgacacaaaaag 360  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||| || || || |||||||||||| |||||   ||| ||| |  ||||||| |||    
T  11616 gtaaaaggccacatgacatcctcaccatgtaattggttgatgcaattaattcatcggcttcttttctcaagtctcatgtttcctgggaagacacaagaag 11517  T
Q  361 aaaagcagacaat 373  Q
    |||| ||||||||    
T  11516 aaaaacagacaat 11504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 11687 - 11651
Alignment:
Q  188 acaacaaagtggcatgtcattcaattttttatcactt 224  Q
    |||||||||||||||||||||||||||||||||||||    
T  11687 acaacaaagtggcatgtcattcaattttttatcactt 11651  T

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