View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12913_high_26 (Length: 387)
Name: NF12913_high_26
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12913_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 369
Target Start/End: Original strand, 4309473 - 4309829
Alignment:
| Q |
16 |
aatatagttgaaattaagaaaataaatacaaatatagtgactttagttaggtttagtctcaagcatnnnnnnnttaaaccaaagcatgtgtttattttta |
115 |
Q |
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| T |
4309473 |
aatatagttgaaattaagaaaataaatacaaatataatgactttagttaggtttagtctcgagcataaaaaaattaaaccaaagcatatgtttattttta |
4309572 |
T |
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| Q |
116 |
c---ggtggccacaaacatgcgttattttaaagctacaggaaggtagcttctacattaacgtaatttgaaacgcgaaaacaaacaagctacacgctgtta |
212 |
Q |
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| T |
4309573 |
tagtggtggccacaaacatgcgttattttaaagctacagtaagatagcttctacattaacgtaatttgaaacgcgaaaacaaacaagctacacgctgtta |
4309672 |
T |
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| Q |
213 |
aacgagtatcttggagacactttttaccatttctcttctctaagaaaacaatagaccacactattacaatttgtgcacgaacagacgtgggatgatagaa |
312 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4309673 |
aacgagtattttggagacactttttaccatttctcttctctaggaaaacaatagaccacactattacaatttgtgcatgaacagacgtgggatgatagaa |
4309772 |
T |
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| Q |
313 |
atattggtcaatgaatccgatggtaaatattaaaagcagcccactgaaatgcaacaa |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4309773 |
atattggtcaatgaatccgatggtaaatattaaaagcagcccactaaaatgcaacaa |
4309829 |
T |
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