View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12913_high_28 (Length: 349)

Name: NF12913_high_28
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12913_high_28
NF12913_high_28
[»] chr4 (9 HSPs)
chr4 (61-332)||(55664866-55665137)
chr4 (61-198)||(54627767-54627899)
chr4 (265-321)||(54861679-54861735)
chr4 (219-321)||(54627608-54627717)
chr4 (84-155)||(55636063-55636134)
chr4 (137-198)||(55635985-55636046)
chr4 (265-297)||(55658855-55658887)
chr4 (132-187)||(52985206-52985261)
chr4 (169-198)||(54861546-54861575)
[»] chr8 (2 HSPs)
chr8 (118-198)||(9890255-9890337)
chr8 (219-333)||(9890085-9890206)
[»] chr2 (1 HSPs)
chr2 (82-198)||(13402240-13402357)


Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 61 - 332
Target Start/End: Original strand, 55664866 - 55665137
Alignment:
Q  61 ctaggctaatatttatataactatcaatccagcttcaacaaccacatcctattgcactttgatgttttctcttaataaaattagacttacaaaacatacc 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  55664866 ctaggctaatatttatataactatcaatccagcttcaacaaccacatcctattgcactttgatgtttactcttaataaaattagacttacaaaacatacc 55664965  T
Q  161 tatcaatgatttcaggttataatatttcaaattttaatctatagttctttacgcaataaaaagttaaatttaattagaaatatttgggtaacagctaatt 260  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  55664966 tatcaatgatttcaggttataatatttcaaattttaatttatagttctttacgcaataaaaagttaaatttaattagaaataattgggtaacagctaatt 55665065  T
Q  261 atatcaatccattatgacattacctgagtctgcatattgtctccagcaacaatatttcccaacgtgtgaagt 332  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  55665066 atatcaatccattatgacattacctgagtctgcatattgtccccagcaacaatatttcccagcgtgtgaagt 55665137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 61 - 198
Target Start/End: Complemental strand, 54627899 - 54627767
Alignment:
Q  61 ctaggctaatatttatataactatcaatccagcttcaacaaccacatcctattgcactttgatgttttctcttaataaaattagacttacaaaacatacc 160  Q
    |||||||||||||| || || | || ||| |||||||||||||||||      ||| |||| |||||||||||||| |||||||||||||||||| ||||    
T  54627899 ctaggctaatatttctaaaattctctatcaagcttcaacaaccacata-----gcattttggtgttttctcttaatcaaattagacttacaaaacttacc 54627805  T
Q  161 tatcaatgatttcaggttataatatttcaaattttaat 198  Q
     |||||| ||| |||  |||||||||||||||||||||    
T  54627804 aatcaataattacagactataatatttcaaattttaat 54627767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 265 - 321
Target Start/End: Original strand, 54861679 - 54861735
Alignment:
Q  265 caatccattatgacattacctgagtctgcatattgtctccagcaacaatatttccca 321  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  54861679 caatccattatgacattacctgagtctgcatattgtctccagttacaatatttccca 54861735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 219 - 321
Target Start/End: Complemental strand, 54627717 - 54627608
Alignment:
Q  219 aaaagttaaatttaattagaaatatttgggtaacagctaattatatcaat-------ccattatgacattacctgagtctgcatattgtctccagcaaca 311  Q
    ||||| |||||||||||||||||| || |||| |||||||||||| ||||       ||||||||||| |||||||||||||||||  |||||||  |||    
T  54627717 aaaaggtaaatttaattagaaataattaggtagcagctaattataacaattcccaatccattatgacaatacctgagtctgcatatcatctccagataca 54627618  T
Q  312 atatttccca 321  Q
    ||||||||||    
T  54627617 atatttccca 54627608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 84 - 155
Target Start/End: Complemental strand, 55636134 - 55636063
Alignment:
Q  84 tcaatccagcttcaacaaccacatcctattgcactttgatgttttctcttaataaaattagacttacaaaac 155  Q
    |||||| ||||||||||||||||| |||| | | |||| ||||||||||||||||||||||| |||||||||    
T  55636134 tcaatcaagcttcaacaaccacatactatagtattttggtgttttctcttaataaaattagagttacaaaac 55636063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 55636046 - 55635985
Alignment:
Q  137 aaaattagacttacaaaacatacctatcaatgatttcaggttataatatttcaaattttaat 198  Q
    ||||||||| ||||||||| ||||||||||| ||||||||||| || |||||||||||||||    
T  55636046 aaaattagagttacaaaacttacctatcaataatttcaggttacaacatttcaaattttaat 55635985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 297
Target Start/End: Original strand, 55658855 - 55658887
Alignment:
Q  265 caatccattatgacattacctgagtctgcatat 297  Q
    |||||||||||||||||||||||||||||||||    
T  55658855 caatccattatgacattacctgagtctgcatat 55658887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 52985206 - 52985261
Alignment:
Q  132 ttaataaaattagacttacaaaacatacctatcaatgatttcaggttataatattt 187  Q
    ||||| |||||||||||||||||  |||||||||||  ||||||| ||||||||||    
T  52985206 ttaatcaaattagacttacaaaatttacctatcaatagtttcaggatataatattt 52985261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 198
Target Start/End: Original strand, 54861546 - 54861575
Alignment:
Q  169 atttcaggttataatatttcaaattttaat 198  Q
    ||||||||||||||||||||||||||||||    
T  54861546 atttcaggttataatatttcaaattttaat 54861575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 198
Target Start/End: Complemental strand, 9890337 - 9890255
Alignment:
Q  118 tttgatgttttctcttaataaaattagact--tacaaaacatacctatcaatgatttcaggttataatatttcaaattttaat 198  Q
    |||| |||||||| ||||| ||||||||||  |||||||| |||||||||||  |||||||||||||||||||||||||||||    
T  9890337 tttggtgttttctattaatcaaattagactcttacaaaacttacctatcaatagtttcaggttataatatttcaaattttaat 9890255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 333
Target Start/End: Complemental strand, 9890206 - 9890085
Alignment:
Q  219 aaaagttaaatttaattagaaatatttgggtaacagctaattatatcaatcca-------ttatgacattacctgagtctgcatattgtctccagcaaca 311  Q
    |||||||| ||||||||||||||| ||||||| || ||||||  | |||||||       |||||||||||||||||| ||||| | ||||||  |||||    
T  9890206 aaaagttagatttaattagaaataattgggtagcaactaattgaaacaatccacaaccaattatgacattacctgagtttgcatgtcgtctccgccaaca 9890107  T
Q  312 atatttcccaacgtgtgaagtg 333  Q
    ||||||||||| ||| ||||||    
T  9890106 atatttcccaatgtgcgaagtg 9890085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 13402357 - 13402240
Alignment:
Q  82 tatcaatccagcttcaacaaccacatcctattgcactttgatgttttctcttaataaaattagacttacaaaacatacctatcaatgatttc-aggttat 180  Q
    |||||||| ||||||||||||||||| || | ||| |||| ||||||| || ||| ||||||||||| |||||  || |||||||| ||||| || ||||    
T  13402357 tatcaatcaagcttcaacaaccacatactttagcattttggtgttttccctaaatcaaattagacttgcaaaatttaactatcaataatttcaagtttat 13402258  T
Q  181 aatatttcaaattttaat 198  Q
    | ||||||||||||||||    
T  13402257 attatttcaaattttaat 13402240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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