View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12913_high_3 (Length: 667)
Name: NF12913_high_3
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12913_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 225 - 650
Target Start/End: Original strand, 23766521 - 23766946
Alignment:
| Q |
225 |
gacatatatttatataagatatactttatataggcgttaattaaaggatctaaatccaatcatccaaaatcaaaggaaatttctacaactaacaaatgaa |
324 |
Q |
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| T |
23766521 |
gacatatatttatataagatatactttatataggcgttaattaaaggatctaaatccaatcatccaaaatgaaaggaaatttctacaactaacacatgaa |
23766620 |
T |
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| Q |
325 |
cactagaggtactacgtaacatatactagtaattaatgatcaataaataaaaagatatgtcatgggtcgatcaactcaacaactctcccacatgcatatt |
424 |
Q |
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| T |
23766621 |
cactagaggtactacgtaacatatactagtaattaatgatcaataaataaaaagatatgtcatgggtcgatcaactcaacaactctcccacatgcatatt |
23766720 |
T |
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| Q |
425 |
attttgtggtcactacatacatgatcatgatcaatttgttaaaaaagtttgaccttcttatgattcttaccaccgctaggagaagtggaaaataaggatt |
524 |
Q |
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| T |
23766721 |
attttgtggtcactacatacatgatcatgatcaatttgttaaaaaagtttgaccttcttatgattcttaccaccgcttggagaagtggaaaataaggatt |
23766820 |
T |
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| Q |
525 |
caatctcatgagatagatcaagtgcaacatgaggatgacaacaaccttttcgttttgtagattgacgcagttgttttggttttctaggtggaggtggaag |
624 |
Q |
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| T |
23766821 |
caatctcatgagatagatcaagtgcaacatgaggatgacaacaaccttttcgttttgtagattgacgcagttgttttggttttctaggtggaggtggaag |
23766920 |
T |
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| Q |
625 |
aatcacttgaattttgtgttccatgg |
650 |
Q |
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| T |
23766921 |
aatcacttgaattttgtgttccatgg |
23766946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 23766349 - 23766428
Alignment:
| Q |
53 |
aaataatgatcgagttgttttcgnnnnnnngttacaaaatgatcgaggtccgaaatctatcaagatatatatttttgtgc |
132 |
Q |
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| T |
23766349 |
aaataatgatcgagttgttttcgtttttttgttacaaaatgatcgaggttcgaaatctatcaagatatatatttttgtgc |
23766428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 23766281 - 23766334
Alignment:
| Q |
15 |
actccaaattataagaacttatatacgagggttaacaaaaataatgatcgagtt |
68 |
Q |
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| T |
23766281 |
actccaaattataagaacttatatacgagggttaacaaaaataatgatcgagtt |
23766334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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