View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12913_high_31 (Length: 325)
Name: NF12913_high_31
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12913_high_31 |
 | |
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| [»] scaffold0596 (1 HSPs) |
| | |
|
| [»] scaffold0021 (1 HSPs) |
| | |
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| [»] scaffold0402 (1 HSPs) |
| | |
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| [»] scaffold0323 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 58 - 306
Target Start/End: Complemental strand, 22406753 - 22406508
Alignment:
| Q |
58 |
aaaccttactatgaagtaatttcgaggt-cggtgtaaaattgagttctagagggctatatatagagcatttcaaatcaaca----ggagacttgacatat |
152 |
Q |
| |
|
|||||||||| ||||||||||| | || ||||| ||||||||||| ||||| ||||||| || |||| |||||||||| |||||| |||| | |
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|
| T |
22406753 |
aaaccttactgtgaagtaattttggggggcggtg--aaattgagttcaagaggtctatataaag--cattgcaaatcaacaaggaggagac--gacacac |
22406660 |
T |
|
| Q |
153 |
tacagagatactacatgcaacaaagagaagagctttggggatagaaattgaagattcaattcttggagcaagaattttcctttcttttaggggttatttc |
252 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
22406659 |
tacacagacactacatgcaacaaagagaagagctttggggatagaaattgaagattcaagtcttggagcaagaattttcctttctttta--ggttatttc |
22406562 |
T |
|
| Q |
253 |
ttactcttaatttcatgaattctatctctattttagtactgtttttgattatgg |
306 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22406561 |
ttgttcttaatttcatgaattctatctctattttagtgttgtttttgattatgg |
22406508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 12 - 142
Target Start/End: Original strand, 27611103 - 27611233
Alignment:
| Q |
12 |
atgaacaaaaagctagcacaagaaacaaaaaggaagacggtgaaggaaaccttactatgaagtaatttcgaggtcggtgtaaaattgagttctagagggc |
111 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||| |
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|
| T |
27611103 |
atgaacagaaagctagcacaagaaacaaaaaggaagacggtgaaggaaaccttactatgaagtaattttggggtcggtgtaaaattgagttctaaagggc |
27611202 |
T |
|
| Q |
112 |
tatatatagagcatttcaaatcaacaggaga |
142 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |
|
|
| T |
27611203 |
tatatatagagcatttcaaatgaacaggaga |
27611233 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 153 - 306
Target Start/End: Original strand, 10889765 - 10889916
Alignment:
| Q |
153 |
tacagagatactacatgcaacaaagagaagagctttggggatagaaattgaagattcaattcttggagcaagaattttcctttcttttaggggttatttc |
252 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
10889765 |
tacacagacactacatgcaacaaagagaagagctttggagatagaaattgaagattcgagtcttggagcaagaattttcctttctttta--ggttatttc |
10889862 |
T |
|
| Q |
253 |
ttactcttaatttcatgaattctatctctattttagtactgtttttgattatgg |
306 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10889863 |
ttgttcttaatttcatgaattctatctctattttagtgttgtttttgattatgg |
10889916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 176 - 306
Target Start/End: Complemental strand, 23165216 - 23165089
Alignment:
| Q |
176 |
agagaagagctttggggatagaaattgaagattcaattcttggagcaagaattttcctttcttttaggggttatttcttactcttaatttcatgaattct |
275 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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|
| T |
23165216 |
agagaagagttttggg-atagaaattgaagattcaagtcttggagcaagaattttcctttctttta--ggttatttcttgttcttaatttcatgaattct |
23165120 |
T |
|
| Q |
276 |
atctctattttagtactgtttttgattatgg |
306 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |
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|
| T |
23165119 |
atctctattttagtgttgttttttattatgg |
23165089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 176 - 306
Target Start/End: Complemental strand, 23576473 - 23576346
Alignment:
| Q |
176 |
agagaagagctttggggatagaaattgaagattcaattcttggagcaagaattttcctttcttttaggggttatttcttactcttaatttcatgaattct |
275 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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|
| T |
23576473 |
agagaagagttttggg-atagaaattgaagattcaagtcttggagcaagaattttcctttctttta--ggttatttcttgttcttaatttcatgaattct |
23576377 |
T |
|
| Q |
276 |
atctctattttagtactgtttttgattatgg |
306 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |
|
|
| T |
23576376 |
atctctattttagtgttgttttttattatgg |
23576346 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 140 - 306
Target Start/End: Complemental strand, 4553 - 4389
Alignment:
| Q |
140 |
agacttgacatattacagagatactacatgcaacaaagagaagagctttggggatagaaattgaagattcaattcttggagcaagaattttcctttcttt |
239 |
Q |
| |
|
|||||| ||| | |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
4553 |
agacttcacacactacacagacactacatgcaacaaagagaagagctttggggatagaaattgaagattcaagtcttggagcaagaattttcctttcttt |
4454 |
T |
|
| Q |
240 |
taggggttatttcttactcttaatttcatgaattctatctctattttagtactgtttttgattatgg |
306 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4453 |
ta--ggttatttcttgttcttaatttcatgaattctatctctattttagtgttgtttttgattatgg |
4389 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 5e-56; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 153 - 306
Target Start/End: Original strand, 11543261 - 11543411
Alignment:
| Q |
153 |
tacagagatactacatgcaacaaagagaagagctttggggatagaaattgaagattcaattcttggagcaagaattttcctttcttttaggggttatttc |
252 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11543261 |
tacacagacactacatgcaacaaagagaagagctttggggatagaaattgaa-attcaagtcttggagcaagaattttcctttcttttagg--ttatttc |
11543357 |
T |
|
| Q |
253 |
ttactcttaatttcatgaattctatctctattttagtactgtttttgattatgg |
306 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11543358 |
ttattcttaatttcatgaattctatctctattttagtgttgtttttgattatgg |
11543411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 138 - 306
Target Start/End: Complemental strand, 21432625 - 21432458
Alignment:
| Q |
138 |
ggagacttgacatattacagagatactacatgcaacaaagagaagagctttggggatagaaattgaagattcaattcttggagcaagaa-ttttcctttc |
236 |
Q |
| |
|
|||||||| | | |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
21432625 |
ggagacttcagacattacacagacactacatgcaacaaagagaagagctttggggatagaaattgaagattcaagtcttggagcaagaattttttctttc |
21432526 |
T |
|
| Q |
237 |
ttttaggggttatttcttactcttaatttcatgaattctatctctattttagtactgtttttgattatgg |
306 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
21432525 |
tttta--ggttatttcttgttcttaatttcatgaattctatctctattttagtgttgtttttgatcatgg |
21432458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 10127108 - 10127170
Alignment:
| Q |
244 |
ggttatttcttactcttaatttcatgaattctatctctattttagtactgtttttgattatgg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||| |
|
|
| T |
10127108 |
ggttatttcttactcttaatttcatgaattctatctctattttagtgttcttcttgattatgg |
10127170 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 153 - 306
Target Start/End: Original strand, 119273 - 119424
Alignment:
| Q |
153 |
tacagagatactacatgcaacaaagagaagagctttggggatagaaattgaagattcaattcttggagcaagaattttcctttcttttaggggttatttc |
252 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
119273 |
tacacagacactacatgcaacaaagagaagagctttggagatagaaattgaagattcgagtcttggagcaagaattttcctttctttta--ggttatttc |
119370 |
T |
|
| Q |
253 |
ttactcttaatttcatgaattctatctctattttagtactgtttttgattatgg |
306 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
119371 |
ttgttcttaatttcatgaattctatctctattttagtgttgtttttgattatgg |
119424 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0402
Description:
Target: scaffold0402; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 151 - 306
Target Start/End: Complemental strand, 8416 - 8263
Alignment:
| Q |
151 |
attacagagatactacatgcaacaaagagaagagctttggggatagaaattgaagattcaattcttggagcaagaattttcctttcttttaggggttatt |
250 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8416 |
attacacagacactacatgcaacaaagagaacagctttggggatagaaattgaagattcaagtcttggagcaagaattttcctttctttta--ggttatt |
8319 |
T |
|
| Q |
251 |
tcttactcttaatttcatgaattctatctctattttagtactgtttttgattatgg |
306 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||| | ||||||||||||||| |
|
|
| T |
8318 |
tcttgttcttaatttcatgaattctatctatattttaatgttgtttttgattatgg |
8263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 11063852 - 11063736
Alignment:
| Q |
21 |
aagctagcacaagaaacaaaaaggaagacggtgaaggaaaccttactatgaagtaatttcgaggtcggtgtaaaattgagttctagagggctatatatag |
120 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11063852 |
aagctagcgcaagaaacaaagaggaagacggtgaaggaaaccttactatgaagtaattttggggtcggtgtaaaattgagttctagagggctatatatag |
11063753 |
T |
|
| Q |
121 |
agcatttcaaatcaaca |
137 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
11063752 |
agcatttcaaatcaaca |
11063736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 141 - 306
Target Start/End: Complemental strand, 14277399 - 14277230
Alignment:
| Q |
141 |
gacttgacatattacagagatactacatgcaacaaagagaagagctttgg-----ggatagaaattgaagattcaattcttggagcaagaattttcc-tt |
234 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||| ||||| || || |
|
|
| T |
14277399 |
gacttcacacattacagagacactacatgcaacaaagagaagagctttggtttggggataggaattgaagattcaagtcttggagcaaaaatttcccctt |
14277300 |
T |
|
| Q |
235 |
tcttttaggggttatttcttactcttaatttcatgaattctatctctattttagtactgtttttgattatgg |
306 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14277299 |
tcttttagg--ttatttcttgttcttaatttcatgaattctatctctattttagtgttgtttttgattatgg |
14277230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0323 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0323
Description:
Target: scaffold0323; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 153 - 263
Target Start/End: Original strand, 10265 - 10373
Alignment:
| Q |
153 |
tacagagatactacatgcaacaaagagaagagctttggggatagaaattgaagattcaattcttggagcaagaattttcctttcttttaggggttatttc |
252 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
10265 |
tacacagacactacatgcaacaaagagaagagctttggggatagaaattgaagattcaagtcttggagtaagaattttcctttctttta--ggttatttc |
10362 |
T |
|
| Q |
253 |
ttactcttaat |
263 |
Q |
| |
|
|| ||||||| |
|
|
| T |
10363 |
tttttcttaat |
10373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 23616160 - 23616205
Alignment:
| Q |
244 |
ggttatttcttactcttaatttcatgaattctatctctattttagt |
289 |
Q |
| |
|
||||||| ||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
23616160 |
ggttattacttactcttaatttcgtgaattatatctctattttagt |
23616205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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