View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12913_high_32 (Length: 323)

Name: NF12913_high_32
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12913_high_32
NF12913_high_32
[»] chr3 (15 HSPs)
chr3 (20-316)||(19957419-19957715)
chr3 (27-316)||(19819857-19820154)
chr3 (27-285)||(20035074-20035340)
chr3 (26-313)||(19839773-19840068)
chr3 (29-290)||(19833153-19833419)
chr3 (29-216)||(19850355-19850542)
chr3 (121-246)||(19813662-19813795)
chr3 (30-174)||(20005917-20006061)
chr3 (121-199)||(19964078-19964156)
chr3 (121-199)||(20026268-20026346)
chr3 (88-203)||(19968702-19968817)
chr3 (28-203)||(20019479-20019645)
chr3 (28-68)||(14855592-14855632)
chr3 (111-203)||(19742879-19742971)
chr3 (28-68)||(19968651-19968691)
[»] chr5 (1 HSPs)
chr5 (29-289)||(27473108-27473376)
[»] chr8 (1 HSPs)
chr8 (167-274)||(22655360-22655479)


Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 20 - 316
Target Start/End: Original strand, 19957419 - 19957715
Alignment:
Q  20 ggattttgtgatgaagatgaaatcaagagtccattttatgatagaaatgatgtcaacgacatcaatggggaaagtgttgatccttttacactagacatgg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19957419 ggattttgtgatgaagatgaaatcaagagtccattttatgatagaaatgatgtcaacgacatcaatggggaaagtgttgatccttttacactagacatgg 19957518  T
Q  120 tatttgatcttgaaaacaggattgagaagcttgaaagagttgtttctaagcttaaagaagcaagatttggccaaaaggttgaaaatatttgatccaattt 219  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19957519 tatttgatcttgaaaacaggattgagaagcttgaaagagtggtttctaagcttaaagaagcaagatttggccaaaaggttgaaaatatttgatccaattt 19957618  T
Q  220 tgctggtatagaaccaacttcttattcttaattatgtgtaatggtttacaataatttgattgctaatagtaccctttttcttgtgcagcctatgcta 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19957619 tgctggtatagaaccaacttcttattcttaattatgtgtaatggtttacaataatttgattgctaatagtaccctttttcttgtgcagcctatgcta 19957715  T

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Target: chr3; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 27 - 316
Target Start/End: Original strand, 19819857 - 19820154
Alignment:
Q  27 gtgatgaagatgaaatcaagagtccattttatgatagaaatgatgtcaacgacatcaatggggaaagtgttgatccttttacactagacatggtatttga 126  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||| |||||| | |||||||||||| |||||| ||||    
T  19819857 gtgatgaagatgaaatcaagagtctattttatgatagaaatgatgtcaatgacatcaatggcgaaaatgttgagcgttttacactagagatggtacttga 19819956  T
Q  127 tcttgaaaacaggattgagaagcttgaaagagttgtttctaagcttaaagaagcaagatttggccaaaaggttgaaaatatttgatccaa--------tt 218  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||| ||||||| ||        ||    
T  19819957 tcttgaaaacaggatcgagaagcttgaaagagtggtttctaagctcaaagaagcaagatttggccaaaagtttgaaaatgtttgatctaacaatgttttt 19820056  T
Q  219 ttgctggtatagaaccaacttcttattcttaattatgtgtaatggtttacaataatttgattgctaatagtaccctttttcttgtgcagcctatgcta 316  Q
    |||||||| ||||||||||||| ||||| |||||||||||||| ||||||||| | |||||||||| |||| ||||||||||||||||||||||||||    
T  19820057 ttgctggtgtagaaccaacttcatattcctaattatgtgtaatagtttacaattacttgattgctattagttccctttttcttgtgcagcctatgcta 19820154  T

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Target: chr3; HSP #3
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 27 - 285
Target Start/End: Complemental strand, 20035340 - 20035074
Alignment:
Q  27 gtgatgaagatgaaatcaagagtccattttatgatagaaatgatgtcaacgacatcaatggggaaagtgttgatccttttacactagacatggtatttga 126  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||| ||||||    
T  20035340 gtgatgaagatgaaataaagagtccattttatgatagaaatgatgtcaatgacatcaatggggaaaatgttgagccttttacactagacatggaatttga 20035241  T
Q  127 tcttgaaaacaggattgagaagcttgaaagagttgtttctaagcttaaagaagcaagatttggccaaaaggttgaaaatatttgatccaa--------tt 218  Q
    |||||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||        ||    
T  20035240 tcttgaaaacagaatggaaaagcttgaaagagtggtttctaagcttaaagaagcaagatttggccaaaaggttgaaaatgtttgatccaacaatgttttt 20035141  T
Q  219 ttgctggtatagaaccaacttcttattcttaattatgtgtaatggtttacaataatttgattgctaa 285  Q
    ||||||||||||||| |||||| ||||| |||||||||||||| ||||||||| |||||||||||||    
T  20035140 ttgctggtatagaactaacttcatattcctaattatgtgtaatagtttacaattatttgattgctaa 20035074  T

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Target: chr3; HSP #4
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 26 - 313
Target Start/End: Original strand, 19839773 - 19840068
Alignment:
Q  26 tgtgatgaagatgaaatcaagagtccattttatgatagaaatgatgtcaacgacatcaatggggaaagtgttgatccttttacactagacatggtatttg 125  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||| |||||| | |||    
T  19839773 tgtgatgaagatgaaatcaagagtctattttatgatagaaatgatgtcaatgacatcaatggggaaattgttgagccttttacactaaacatggaaattg 19839872  T
Q  126 atcttgaaaacaggattgagaagcttgaaagagttgtttctaagcttaaagaagcaagatttggccaaaaggttgaaaatatttgatccaa--------t 217  Q
    |||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| || ||  |||||||||        |    
T  19839873 atcttgaaaacaggatcgagaagcttgaaagagtggtttctaaacttaaagaagcaagatttggccaaaaggtttaacatgattgatccaacaatgcttt 19839972  T
Q  218 tttgctggtatagaaccaacttcttattcttaattatgtgtaatggtttacaataatttgattgctaatagtaccctttttcttgtgcagcctatg 313  Q
    ||||||||||||||||||||||| ||||| ||||||| || ||| ||||||||| |||||||||||||| || |||||||||||||||| ||||||    
T  19839973 tttgctggtatagaaccaacttcatattcctaattatatgcaatagtttacaattatttgattgctaatggttccctttttcttgtgcaacctatg 19840068  T

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Target: chr3; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 29 - 290
Target Start/End: Original strand, 19833153 - 19833419
Alignment:
Q  29 gatgaagatgaaatcaagagtccattttatgatagaaatgatgtcaacgacatcaatggggaaagtgttgatccttttacactagacatggtatttgatc 128  Q
    ||||||||||||| |||||||||| ||||| |||||| |||||||||  |||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  19833153 gatgaagatgaaagcaagagtccactttataatagaattgatgtcaattacatcaatggggaaagtgttgagccttttacactagacatgatatttgatc 19833252  T
Q  129 ttgaaaacaggattgagaagcttgaaagagttgtttctaagcttaaagaagcaagatttggccaaaaggttgaaaatatttgatccaa---------ttt 219  Q
    |||||||||| ||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||         |||    
T  19833253 ttgaaaacagaattgagaagcttgaaagagtgttttctaagcttaaagaagaaagatttggccaaaaggttgaaaatgtttgatccaacaatgctttttt 19833352  T
Q  220 tgctggtatagaaccaacttcttattcttaattatgtgtaatggtttacaataatttgattgctaatagta 290  Q
    |||||| ||||| | |||||| | ||| |||||||||||||    | ||||| ||||||||||||||||||    
T  19833353 tgctggcatagagcaaacttcattttcctaattatgtgtaa----taacaattatttgattgctaatagta 19833419  T

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Target: chr3; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 29 - 216
Target Start/End: Original strand, 19850355 - 19850542
Alignment:
Q  29 gatgaagatgaaatcaagagtccattttatgatagaaatgatgtcaacgacatcaatggggaaagtgttgatccttttacactagacatggtatttgatc 128  Q
    ||||||||||||||||||| |||||||| |||| ||||||||||| | ||||||| ||||||| ||||||||||||||| | || |||| | ||||||||    
T  19850355 gatgaagatgaaatcaagaatccattttgtgatggaaatgatgtccatgacatcagtggggaaggtgttgatccttttagagtatacatagaatttgatc 19850454  T
Q  129 ttgaaaacaggattgagaagcttgaaagagttgtttctaagcttaaagaagcaagatttggccaaaaggttgaaaatatttgatccaa 216  Q
    |||||||||||||||||||| |||| | |||  | |||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  19850455 ttgaaaacaggattgagaagtttgataaagtgttgtctaagcttaaagaagcaagatttggccaaaaggttgaaattgtttgatccaa 19850542  T

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Target: chr3; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 121 - 246
Target Start/End: Original strand, 19813662 - 19813795
Alignment:
Q  121 atttgatcttgaaaacaggattgagaagcttgaaagagttgtttctaagcttaaagaagcaagatttggccaaaaggttgaaaatatttgatccaa---- 216  Q
    ||||||||||||||||||||||||||| |||||||||||  |||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||        
T  19813662 atttgatcttgaaaacaggattgagaaacttgaaagagtgttttctaagctcaaagaagcaagatttggccgaaaggttgaaaatgtttgatccaacaat 19813761  T
Q  217 ----ttttgctggtatagaaccaacttcttattc 246  Q
        |||||||| ||||||||||||||| |||||    
T  19813762 gcttttttgctgatatagaaccaacttcatattc 19813795  T

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Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 174
Target Start/End: Complemental strand, 20006061 - 20005917
Alignment:
Q  30 atgaagatgaaatcaagagtccattttatgatagaaatgatgtcaacgacatcaatggggaaagtgttgatccttttacactagacatggtatttgatct 129  Q
    |||||||||||||||| | |||||||| |||||||||||||||| | | ||| ||||||||| |||||  |||||||||| |||| |||| |||||||||    
T  20006061 atgaagatgaaatcaaaaatccattttgtgatagaaatgatgtcgatgccattaatggggaaggtgttagtccttttacattagatatggcatttgatct 20005962  T
Q  130 tgaaaacaggattgagaagcttgaaagagttgtttctaagcttaa 174  Q
    |||| | |||||| ||||||||||| ||||  ||||||| |||||    
T  20005961 tgaagagaggattaagaagcttgaacgagtattttctaaccttaa 20005917  T

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Target: chr3; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 121 - 199
Target Start/End: Original strand, 19964078 - 19964156
Alignment:
Q  121 atttgatcttgaaaacaggattgagaagcttgaaagagttgtttctaagcttaaagaagcaagatttggccaaaaggtt 199  Q
    |||||| ||||||||||| ||| |||| |||||| |||  ||| |||||||||||||||||||||||||||||||||||    
T  19964078 atttgaacttgaaaacagaattcagaatcttgaaggagaggttgctaagcttaaagaagcaagatttggccaaaaggtt 19964156  T

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Target: chr3; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 121 - 199
Target Start/End: Complemental strand, 20026346 - 20026268
Alignment:
Q  121 atttgatcttgaaaacaggattgagaagcttgaaagagttgtttctaagcttaaagaagcaagatttggccaaaaggtt 199  Q
    |||||| ||||||||||| ||| |||| |||||| |||  ||| |||||||||||||||||||||||||||||||||||    
T  20026346 atttgaacttgaaaacagaattcagaatcttgaaggagaggttgctaagcttaaagaagcaagatttggccaaaaggtt 20026268  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 203
Target Start/End: Original strand, 19968702 - 19968817
Alignment:
Q  88 ggaaagtgttgatccttttacactagacatggtatttgatcttgaaaacaggattgagaagcttgaaagagttgtttctaagcttaaagaagcaagattt 187  Q
    ||||||||| | |||||| | | ||||||| | ||||||| |||||||||||||  |||| ||||||||||  ||| ||||||| ||| |||||||||||    
T  19968702 ggaaagtgtcggtcctttgatattagacatcgcatttgatgttgaaaacaggatcaagaaacttgaaagagaggttgctaagctcaaacaagcaagattt 19968801  T
Q  188 ggccaaaaggttgaaa 203  Q
    |||   ||||||||||    
T  19968802 ggctctaaggttgaaa 19968817  T

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Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 203
Target Start/End: Complemental strand, 20019645 - 20019479
Alignment:
Q  28 tgatgaagatgaaatcaagagtccattttatgatagaaatgatgtcaacgacatcaatggggaaagtgttgatccttttacactagacatggtatttgat 127  Q
    ||||||||||||||||||||||| ||||| ||||||||||| ||  || ||         ||||||||||| |||||| | | ||||||| | |||||||    
T  20019645 tgatgaagatgaaatcaagagtctattttgtgatagaaatggtgagaaaga---------ggaaagtgttggtcctttgatattagacatcgcatttgat 20019555  T
Q  128 cttgaaaacaggattgagaagcttgaaagagttgtttctaagcttaaagaagcaagatttggccaaaaggttgaaa 203  Q
     |||||||||| ||  |||| ||||||||||  ||| ||||||| ||  ||||||||||||||   ||||||||||    
T  20019554 gttgaaaacagaatccagaaacttgaaagagaggttgctaagctcaatcaagcaagatttggctctaaggttgaaa 20019479  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 14855632 - 14855592
Alignment:
Q  28 tgatgaagatgaaatcaagagtccattttatgatagaaatg 68  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  14855632 tgatgaagatgaaatcaagagtctattttgtgatagaaatg 14855592  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 203
Target Start/End: Complemental strand, 19742971 - 19742879
Alignment:
Q  111 tagacatggtatttgatcttgaaaacaggattgagaagcttgaaagagttgtttctaagcttaaagaagcaagatttggccaaaaggttgaaa 203  Q
    ||||||| | ||||||| ||||||||||||||||||| || |||||||  |||   ||||| ||| ||||||||||||||   ||||||||||    
T  19742971 tagacattgcatttgatgttgaaaacaggattgagaaactcgaaagagaggttgtgaagctcaaacaagcaagatttggctctaaggttgaaa 19742879  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 19968651 - 19968691
Alignment:
Q  28 tgatgaagatgaaatcaagagtccattttatgatagaaatg 68  Q
    ||||||||||||||||||||||| ||||| |||||| ||||    
T  19968651 tgatgaagatgaaatcaagagtctattttgtgataggaatg 19968691  T

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Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 29 - 289
Target Start/End: Original strand, 27473108 - 27473376
Alignment:
Q  29 gatgaagatgaaatcaagagtccattttatgatagaaatgatgtcaacgacatcaatggggaaagtgttgatccttttacactagacatggtatttgatc 128  Q
    ||||||||||||||||||| | |||||| ||||  |||||||||||| ||||||| |||||||||| ||||||| |||| | || |||||| ||||||||    
T  27473108 gatgaagatgaaatcaagaattcattttgtgatgaaaatgatgtcaatgacatcagtggggaaagtattgatccatttagagtatacatggaatttgatc 27473207  T
Q  129 ttgaaaacaggattgagaagcttgaaagagttgtttctaagcttaaagaagcaagatttggccaaaaggttgaaaatatttgatccaa--------tttt 220  Q
    |||||||||||||| |||||||||||| |    | |||||||||||||||||||||||||||||||||||||||| | ||||||||||        ||||    
T  27473208 ttgaaaacaggattcagaagcttgaaaaaaggttctctaagcttaaagaagcaagatttggccaaaaggttgaaactgtttgatccaacaatgctttttt 27473307  T
Q  221 gctggtatagaaccaacttcttattcttaattatgtgtaatggtttacaataatttgattgctaatagt 289  Q
    |||||||||||||||||||| ||||  ||||| |||||||| ||||||||| |||| ||||||| ||||    
T  27473308 gctggtatagaaccaacttcatatttctaattttgtgtaatagtttacaatgatttaattgctagtagt 27473376  T

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Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 167 - 274
Target Start/End: Complemental strand, 22655479 - 22655360
Alignment:
Q  167 aagcttaaagaagcaagatttggccaaaaggttgaaaatatttgatccaa------------ttttgctggtatagaaccaacttcttattcttaattat 254  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||            |||||||||||| ||||||||||| |||||||||||||    
T  22655479 aagcttaaagaagcaagatttggccaaaaggttgaaaatgtttgatacaaaaatgtttttttttttgctggtatggaaccaacttcatattcttaattat 22655380  T
Q  255 gtgtaatggtttacaataat 274  Q
    ||||||| ||||||||||||    
T  22655379 gtgtaatagtttacaataat 22655360  T

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