View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12913_high_36 (Length: 286)

Name: NF12913_high_36
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12913_high_36
NF12913_high_36
[»] chr3 (21 HSPs)
chr3 (9-270)||(10373619-10373883)
chr3 (9-270)||(9840889-9841150)
chr3 (9-270)||(9851770-9852031)
chr3 (9-270)||(10128956-10129217)
chr3 (9-270)||(10519516-10519777)
chr3 (16-284)||(10262715-10262986)
chr3 (9-270)||(10034031-10034295)
chr3 (9-284)||(10582627-10582903)
chr3 (9-270)||(10431818-10432082)
chr3 (9-270)||(11779759-11780020)
chr3 (10-284)||(10197690-10197967)
chr3 (9-270)||(11771265-11771526)
chr3 (10-284)||(10090808-10091085)
chr3 (31-262)||(10502622-10502852)
chr3 (24-270)||(10361593-10361839)
chr3 (199-262)||(10530686-10530749)
chr3 (196-284)||(10186397-10186485)
chr3 (9-69)||(10665698-10665758)
chr3 (196-270)||(10079441-10079515)
chr3 (238-284)||(10665543-10665589)
chr3 (214-262)||(10679477-10679525)
[»] scaffold0083 (1 HSPs)
scaffold0083 (9-270)||(55379-55640)
[»] chr2 (1 HSPs)
chr2 (10-283)||(26908906-26909179)
[»] chr8 (2 HSPs)
chr8 (188-284)||(11487052-11487148)
chr8 (217-282)||(44955662-44955727)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 9 - 270
Target Start/End: Original strand, 10373619 - 10373883
Alignment:
Q  9 gagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttggtacaaataataacttaacaccttcacaaataactacttc 108  Q
    |||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||| ||||| ||||||||||||    
T  10373619 gagaagaaagagaatcgagttccaagtgtgtaagacaagtgcttctcagaatcaattttggaacagctaataacttaacacattcacgaataactacttc 10373718  T
Q  109 ttgcatcatacacggagaatcactctcaagcaatggcaattgggaactttcac---caagcccatagatattcannnnnnnnattgaagacaaccaatgc 205  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||   ||||||||| ||||||||        ||||||||||||||||||    
T  10373719 ttgcatcatacacggagaatcactctcaagcaatgacagttgggaactttcactctcaagcccattgatattcatttcttttattgaagacaaccaatgc 10373818  T
Q  206 agagtagatggtgtttccaatagatgagaacaaccttctatttcaatttcttctatgcaaggaag 270  Q
    ||||||||||||||||||||||||||||||||||||  |||| |||||||||||||| |||||||    
T  10373819 agagtagatggtgtttccaatagatgagaacaacctgatattacaatttcttctatggaaggaag 10373883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 9 - 270
Target Start/End: Complemental strand, 9841150 - 9840889
Alignment:
Q  9 gagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttggtacaaataataacttaacac-cttcacaaataactactt 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||  ||||||| |||  ||| | ||||| |    
T  9841150 gagaagaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttggaacaactaatagtttaacacacttttcaa-tcactacat 9841052  T
Q  108 cttgcatcatacacggagaatcactctcaagcaatggcaattgggaactttcaccaagcccatagatattcannnnnnnnattgaagacaaccaatgcag 207  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||        ||||||||||||||||||||    
T  9841051 cttgcatcatacatggagaatcactctcaagcaatgacaattgggaactttcaccaagcccattgatattcattttttttattgaagacaaccaatgcag 9840952  T
Q  208 agtagatggtgtttccaatagatgagaacaaccttctatttcaatttcttctatgcaaggaag 270  Q
    ||||||||||||||||||||||||||||||||||  |||| |||||| ||||||| |||||||    
T  9840951 agtagatggtgtttccaatagatgagaacaacctgatattacaattttttctatggaaggaag 9840889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 9 - 270
Target Start/End: Complemental strand, 9852031 - 9851770
Alignment:
Q  9 gagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttggtacaaataataacttaacac-cttcacaaataactactt 107  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||  ||||| |||||||| |||  ||| |  |||| |    
T  9852031 gagaagaaagtgaatcgagtctcaagtgtgtaagacaagtgcttctcataatcaattttggcacagctaatagcttaacacacttttcaa-tctctacat 9851933  T
Q  108 cttgcatcatacacggagaatcactctcaagcaatggcaattgggaactttcaccaagcccatagatattcannnnnnnnattgaagacaaccaatgcag 207  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||        ||||||||||||||| ||||    
T  9851932 cttgcatcatacacggagaatcactctcaagcaatgacaattgggaactttcaccaagcccattgatattcattttttttattgaagacaaccaacgcag 9851833  T
Q  208 agtagatggtgtttccaatagatgagaacaaccttctatttcaatttcttctatgcaaggaag 270  Q
    ||||||||||||||||||||||||||||||||||  |||| |||||||||||||| |||||||    
T  9851832 agtagatggtgtttccaatagatgagaacaacctgatattacaatttcttctatggaaggaag 9851770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 9 - 270
Target Start/End: Complemental strand, 10129217 - 10128956
Alignment:
Q  9 gagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttggtacaaataataacttaacaccttcacaaataactacttc 108  Q
    |||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||  ||||| ||||  ||  |    |||  |||| |     
T  10129217 gagaagaaagagaatagagtctcaagtgtgtaagacaagtgcttttcagaatcaattttggcacagctaatagcttagaacagttgtgaatcgctacatg 10129118  T
Q  109 ttgcatcatacacggagaatcactctcaagcaatggcaattgggaactttcaccaagcccatagatattcannnnnnnnattgaagacaaccaatgcaga 208  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||        |||||||||||||||||||||    
T  10129117 ttgcatcatacacggagaatcactctcaagcaatgacaattgggaactttcaccaagcccattgatattcattttttttattgaagacaaccaatgcaga 10129018  T
Q  209 gtagatggtgtttccaatagatgagaacaaccttctatttcaatttcttctatgcaaggaag 270  Q
    |||||||||||||||||||||||||||||||||  |||| |||||||||||||| |||||||    
T  10129017 gtagatggtgtttccaatagatgagaacaacctgatattacaatttcttctatggaaggaag 10128956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 9 - 270
Target Start/End: Complemental strand, 10519777 - 10519516
Alignment:
Q  9 gagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttggtacaaataataacttaacaccttcacaaataactacttc 108  Q
    |||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||  ||||| ||||||||  |    |||  |||| ||    
T  10519777 gagaagaaagagaatcgagtcccaagtgtgtaagacaagtgcttttcagaatcaattttggcacagctaatagcttaacacactttttaatctctacatc 10519678  T
Q  109 ttgcatcatacacggagaatcactctcaagcaatggcaattgggaactttcaccaagcccatagatattcannnnnnnnattgaagacaaccaatgcaga 208  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||        ||||||||||||||||||| |    
T  10519677 ttgcatcatacaaggagaatcactctcaagcaatgacaattgggaactttcaccaagcccattgatattcattttttttattgaagacaaccaatgcaaa 10519578  T
Q  209 gtagatggtgtttccaatagatgagaacaaccttctatttcaatttcttctatgcaaggaag 270  Q
    ||||||||||||||||||||||||  |||||||| |||| |||||||||||||| |||||||    
T  10519577 gtagatggtgtttccaatagatgaacacaaccttttattacaatttcttctatggaaggaag 10519516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 10262986 - 10262715
Alignment:
Q  16 aagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttggtacaaataataacttaacaccttcacaaataactacttcttgcatc 115  Q
    |||||||  |||| |||||||||| ||||||||||||||||||||||||||||| |||  |||||||||||||| ||||| |||||||||||||||||||    
T  10262986 aagagaactgagtttcaagtgtgttagacaagtgcttctcagaatcaattttggaacagctaataacttaacacattcacgaataactacttcttgcatc 10262887  T
Q  116 atacacggagaatcactctcaagcaatggcaattgggaactttcaccaagcccatagatattcannnnnnnnattgaagacaaccaatgcagagtagatg 215  Q
    |||||||||||||||||||||||||||| ||||||||  ||| || ||||||||| |||||| |        | ||| ||||||||||||| |||   ||    
T  10262886 atacacggagaatcactctcaagcaatgacaattgggtccttccatcaagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttg 10262787  T
Q  216 g---tgtttccaatagatgagaacaaccttctatttcaatttcttctatgcaaggaagatgactaggcaaat 284  Q
    |   |||||||||||||||||||||||||| |||| |||||||||||||||||||||| |  ||||||||||    
T  10262786 gctctgtttccaatagatgagaacaaccttttattacaatttcttctatgcaaggaagtttgctaggcaaat 10262715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 9 - 270
Target Start/End: Complemental strand, 10034295 - 10034031
Alignment:
Q  9 gagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttggtacaaataataacttaacaccttcacaaataactacttc 108  Q
    |||| |||||||||| ||||  |||||||||||||||||||||||||| |||||||||||| |||  ||||| ||||  ||  |    |||  |||| |     
T  10034295 gagaagaaagagaattgagttccaagtgtgtaagacaagtgcttctcaaaatcaattttggcacagctaatagcttagaacagttgtgaatcgctacatg 10034196  T
Q  109 ttgcatcatacacggagaatcactctcaagcaatggcaattgggaactttcac---caagcccatagatattcannnnnnnnattgaagacaaccaatgc 205  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||   ||||||||| ||||||||        ||||||||||||||||||    
T  10034195 ttgcatcatacacggagaatcactctcaagcaatgacagttgggaactttcactctcaagcccattgatattcattttttttattgaagacaaccaatgc 10034096  T
Q  206 agagtagatggtgtttccaatagatgagaacaaccttctatttcaatttcttctatgcaaggaag 270  Q
    ||||||||||||||||||||||||||||||||||||  |||| |||||| ||||||| |||||||    
T  10034095 agagtagatggtgtttccaatagatgagaacaacctgatattacaattttttctatggaaggaag 10034031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 284
Target Start/End: Complemental strand, 10582903 - 10582627
Alignment:
Q  9 gagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttggtacaaataataacttaacaccttcacaaataactacttc 108  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||  |||||  ||||| |  |     || ||| | ||    
T  10582903 gagaagaaagagaatagagtctcaagtgtgtaagacaagtgcttctcagaatcaattttggcacagctaataggttaacgcagtttgccatcactgcatc 10582804  T
Q  109 ttgcatcatacacggagaatcactctcaagcaatggcaattgggaactttcaccaagcccatagatattcannnnnnnn-attgaagacaaccaatgcag 207  Q
    ||||||||||||||||||||||||||||||||||  ||||||||  ||||||||||||||||  || || |         ||||| |||||||||||||     
T  10582803 ttgcatcatacacggagaatcactctcaagcaataacaattgggtcctttcaccaagcccatcaatcttaatttttttttattgacgacaaccaatgcaa 10582704  T
Q  208 agtagatggtgtttccaatagatgagaacaaccttctatttcaatttcttctatgcaaggaagatgactaggcaaat 284  Q
    ||| |    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10582703 agtgggctctgtttccaatagatgaacacaaccttctatttcaatttcttctatgcaaggaagatggctaggcaaat 10582627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 270
Target Start/End: Original strand, 10431818 - 10432082
Alignment:
Q  9 gagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttggtacaaataataacttaacaccttcacaaataactacttc 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||  |    ||| ||||| |     
T  10431818 gagaagaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttggcacaactaatagcttaacacagttttcaatcactacatg 10431917  T
Q  109 ttgcatcatacacggagaatcactctcaagcaatggcaattgggaactttcaccaagcccatagatattcannnnnnnnattgaagacaaccaatgcaga 208  Q
    ||||||||||||||||||||||||||||||||||| ||| | ||  ||| |  ||||||||| |||||| |        ||||| ||||||||||||| |    
T  10431918 ttgcatcatacacggagaatcactctcaagcaatgacaaattggtccttccgtcaagcccattgatattaactttctttattgacgacaaccaatgcata 10432017  T
Q  209 gtagatgg---tgtttccaatagatgagaacaaccttctatttcaatttcttctatgcaaggaag 270  Q
    ||   |||   |||||||| ||| ||||||||||||  ||| |||||||||||||||||||||||    
T  10432018 gtgtttggctctgtttccagtagttgagaacaacctgatatatcaatttcttctatgcaaggaag 10432082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 9 - 270
Target Start/End: Original strand, 11779759 - 11780020
Alignment:
Q  9 gagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttggtacaaataataacttaacac-cttcacaaataactactt 107  Q
    |||| |||||||||| ||||||||||| |||||||||| ||||||||| |||||||||||| |||| | ||| || | ||| |||  ||| | ||||| |    
T  11779759 gagaagaaagagaatggagtctcaagtatgtaagacaaatgcttctcaaaatcaattttggcacaactgatagctcagcacacttttcaa-tcactacat 11779857  T
Q  108 cttgcatcatacacggagaatcactctcaagcaatggcaattgggaactttcaccaagcccatagatattcannnnnnnnattgaagacaaccaatgcag 207  Q
     |||||||||| |  |||||||||| |||||||||| |||||| |   |||||||||| || | ||||||||        ||||| |||||||||||||     
T  11779858 gttgcatcatagatagagaatcactatcaagcaatgacaattgtgtcttttcaccaagtcctttgatattcatttcttttattgacgacaaccaatgcaa 11779957  T
Q  208 agtagatggtgtttccaatagatgagaacaaccttctatttcaatttcttctatgcaaggaag 270  Q
    |||||||||| |||||||||||||||||||||||| |||| |||||||||| |||||||||||    
T  11779958 agtagatggtttttccaatagatgagaacaaccttttattacaatttcttcgatgcaaggaag 11780020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 10 - 284
Target Start/End: Complemental strand, 10197967 - 10197690
Alignment:
Q  10 agatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttggtacaaataataacttaacaccttcacaaataactacttct 109  Q
    |||||||||||||| |||| ||||||||  |||||||||||||||  |||||| |||||| | |  ||||| |||| |||  |  | ||| ||||| |||    
T  10197967 agatgaaagagaatagagtttcaagtgttgaagacaagtgcttcttggaatcatttttggcatagctaatagcttagcacactttcgaatcactacatct 10197868  T
Q  110 tgcatcatacacggagaatcactctcaagcaatggcaattgggaactttcaccaagcccatagatattcannnnnnnnattgaagacaaccaatgcagag 209  Q
    | |||||||||||||||||||||||||||||||| ||||||||  |||||||||| ||||| |||||| |        | ||| ||||||||||||| ||    
T  10197867 tccatcatacacggagaatcactctcaagcaatgacaattgggtcctttcaccaaacccatcgatattaattttctttactgacgacaaccaatgcaaag 10197768  T
Q  210 tagatgg---tgtttccaatagatgagaacaaccttctatttcaatttcttctatgcaaggaagatgactaggcaaat 284  Q
    |   |||   |||||||||||||||||||||||||| |||| ||||||||| |||||||||||| |  ||||||||||    
T  10197767 tgtttggctctgtttccaatagatgagaacaaccttttattacaatttcttttatgcaaggaaggttgctaggcaaat 10197690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 270
Target Start/End: Complemental strand, 11771526 - 11771265
Alignment:
Q  9 gagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttggtacaaataataacttaacac-cttcacaaataactactt 107  Q
    |||| |||||||||| ||||||||||| |||||||||||||||||||| |||||||||||| |||| | ||| || ||||  |||  ||| | ||||| |    
T  11771526 gagaagaaagagaatggagtctcaagtatgtaagacaagtgcttctcaaaatcaattttggcacaactgatagctcaacatacttttcaa-tcactacat 11771428  T
Q  108 cttgcatcatacacggagaatcactctcaagcaatggcaattgggaactttcaccaagcccatagatattcannnnnnnnattgaagacaaccaatgcag 207  Q
     |||||||||| |  |||||||||| |||||||||| ||| || |   |||||||||| || | ||||||||        ||||| |||||||||||||     
T  11771427 gttgcatcatagatagagaatcactatcaagcaatgacaactgtgtcttttcaccaaggccgttgatattcatttcttttattgacgacaaccaatgcaa 11771328  T
Q  208 agtagatggtgtttccaatagatgagaacaaccttctatttcaatttcttctatgcaaggaag 270  Q
    |||||||||| ||||||||||||||||||||||||  ||| |||||||||| |||||||||||    
T  11771327 agtagatggtttttccaatagatgagaacaacctttgattacaatttcttcgatgcaaggaag 11771265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 10 - 284
Target Start/End: Complemental strand, 10091085 - 10090808
Alignment:
Q  10 agatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttggtacaaataataacttaacaccttcacaaataactacttct 109  Q
    |||||||||||||| |||| ||||||||  |||||||||||||||  |||||| |||||| | |  ||||| |||| |||  |  | ||| ||||| |||    
T  10091085 agatgaaagagaatagagtttcaagtgttgaagacaagtgcttcttggaatcatttttggcatagctaatagcttagcacactttcgaatcactacatct 10090986  T
Q  110 tgcatcatacacggagaatcactctcaagcaatggcaattgggaactttcaccaagcccatagatattcannnnnnnnattgaagacaaccaatgcagag 209  Q
    | ||||||||| |||||||||||||||||||||| ||||||||  |||||||||| ||||| |||||| |        | ||| ||||||||||||| ||    
T  10090985 tccatcatacatggagaatcactctcaagcaatgacaattgggtcctttcaccaaacccatcgatattaattttctttactgacgacaaccaatgcaaag 10090886  T
Q  210 tagatgg---tgtttccaatagatgagaacaaccttctatttcaatttcttctatgcaaggaagatgactaggcaaat 284  Q
    |   |||   |||||||||||||||||||||||||| |||| ||||||||| |||||||||||| |  ||||||||||    
T  10090885 tgtttggctctgtttccaatagatgagaacaaccttttattacaatttcttttatgcaaggaaggttgctaggcaaat 10090808  T

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Target: chr3; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 262
Target Start/End: Complemental strand, 10502852 - 10502622
Alignment:
Q  31 caagtgtgtaagacaagtgcttctcagaatcaattttggtacaaataataacttaacaccttcacaaataactacttcttgcatcatacacggagaatca 130  Q
    |||||||  ||||||||||||||||| ||||| |||||| | | |||||| | ||||||    |||||| ||||| | |||||||||||| ||||| |||    
T  10502852 caagtgttgaagacaagtgcttctca-aatcatttttggaatagataatagcgtaacacacctacaaatgactacatgttgcatcatacatggagagtca 10502754  T
Q  131 ctctcaagcaatggcaattgggaactttcaccaagcccatagatattcannnnnnnnattgaagacaaccaatgcagagtagatggtgtttccaatagat 230  Q
    ||| |||||||||  ||||| |   ||||||||||||||| ||||||          | ||| |||| |||||||| |||||  ||||||||||||||||    
T  10502753 ctcccaagcaatgataattgagtcttttcaccaagcccattgatattaccttttttcaatgacgacagccaatgcaaagtaggcggtgtttccaatagat 10502654  T
Q  231 gagaacaaccttctatttcaatttcttctatg 262  Q
    ||| ||||||||||||| ||||||||||||||    
T  10502653 gagcacaaccttctattacaatttcttctatg 10502622  T

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Target: chr3; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 270
Target Start/End: Original strand, 10361593 - 10361839
Alignment:
Q  24 cgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttggtacaaataataacttaacaccttcacaaataactacttcttgcatcatacacgg 123  Q
    |||||| |||| |||||||||||||||||||||||||||||||||| ||| || | | | || | |  |    ||| ||| | | |||||||||||| ||    
T  10361593 cgagtcccaagagtgtaagacaagtgcttctcagaatcaattttggcacagatgacagcatagcgcacttttgaatcactgcatgttgcatcatacatgg 10361692  T
Q  124 agaatcactctcaagcaatggcaattgggaactttcaccaagcccatagatattcannnnnnnnattgaagacaaccaatgcagagtagatggtgtttcc 223  Q
    |||||| ||| |||| |||| ||||||||  ||| || |||||||||  || || |        ||||| ||||||||||||| ||| |    |||||||    
T  10361693 agaatcgctcccaagaaatgacaattgggtccttccatcaagcccatcaatcttaaaattttttattgacgacaaccaatgcaaagtgggctctgtttcc 10361792  T
Q  224 aatagatgagaacaaccttctatttcaatttcttctatgcaaggaag 270  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||    
T  10361793 aatagatgagaacaaccttgtattacaatttcttctatgcaaggaag 10361839  T

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Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 10530749 - 10530686
Alignment:
Q  199 ccaatgcagagtagatggtgtttccaatagatgagaacaaccttctatttcaatttcttctatg 262  Q
    |||||||| ||||  |||||||||||||||| ||| |||||||||||||| |||||||||||||    
T  10530749 ccaatgcaaagtatgtggtgtttccaatagacgagcacaaccttctatttgaatttcttctatg 10530686  T

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Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 284
Target Start/End: Complemental strand, 10186485 - 10186397
Alignment:
Q  196 caaccaatgcagagtagatggtgtttccaatagatgagaacaaccttctatttcaatttcttctatgcaaggaagatgactaggcaaat 284  Q
    |||||||| || ||||| |||||| ||||||||||  | |||||||| |||   ||||||||||||||||||||| | |||||||||||    
T  10186485 caaccaatccaaagtaggtggtgtatccaatagattcgcacaaccttttatcataatttcttctatgcaaggaaggtcactaggcaaat 10186397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 10665758 - 10665698
Alignment:
Q  9 gagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttgg 69  Q
    |||| ||||| |||| ||||  |||||||||||||||||||||||||| ||||||||||||    
T  10665758 gagaagaaagtgaatagagtgccaagtgtgtaagacaagtgcttctcataatcaattttgg 10665698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 270
Target Start/End: Complemental strand, 10079515 - 10079441
Alignment:
Q  196 caaccaatgcagagtagatggtgtttccaatagatgagaacaaccttctatttcaatttcttctatgcaaggaag 270  Q
    |||||||| || ||||| |||||||||||||||||  | |||||||| |||   |||||||||||||||||||||    
T  10079515 caaccaatccaaagtaggtggtgtttccaatagattcgcacaaccttttatcataatttcttctatgcaaggaag 10079441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 10665589 - 10665543
Alignment:
Q  238 accttctatttcaatttcttctatgcaaggaagatgactaggcaaat 284  Q
    |||||| ||||||||||||||||| ||||||||||| ||||||||||    
T  10665589 accttcaatttcaatttcttctatacaaggaagatggctaggcaaat 10665543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 10679525 - 10679477
Alignment:
Q  214 tggtgtttccaatagatgagaacaaccttctatttcaatttcttctatg 262  Q
    |||||||||||||||| ||| | |||||||||||| |||||||||||||    
T  10679525 tggtgtttccaatagacgagcataaccttctatttgaatttcttctatg 10679477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 9 - 270
Target Start/End: Original strand, 55379 - 55640
Alignment:
Q  9 gagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttggtacaaataataacttaacaccttcacaaataactacttc 108  Q
    |||| ||||| |||| |||| ||||||||||||||||||||||| |||||||||||||||| |||  ||||| ||||  ||  |    |||  |||| |     
T  55379 gagaagaaagtgaatggagtttcaagtgtgtaagacaagtgcttttcagaatcaattttggcacagctaatagcttagaacagttgtgaatcgctacatg 55478  T
Q  109 ttgcatcatacacggagaatcactctcaagcaatggcaattgggaactttcaccaagcccatagatattcannnnnnnnattgaagacaaccaatgcaga 208  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||        |||||||||||||||||||||    
T  55479 ttgcatcatacacggagaatcactctcaagcaatgacaattgggaactttcaccaagcccattgatattcattatttttattgaagacaaccaatgcaga 55578  T
Q  209 gtagatggtgtttccaatagatgagaacaaccttctatttcaatttcttctatgcaaggaag 270  Q
    |||||||||||||||||||||||||||||||||  |||| |||||||||||||| |||||||    
T  55579 gtagatggtgtttccaatagatgagaacaacctgatattacaatttcttctatggaaggaag 55640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 10 - 283
Target Start/End: Complemental strand, 26909179 - 26908906
Alignment:
Q  10 agatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttggtacaaataataacttaacaccttcacaaataactacttct 109  Q
    |||||||||||||| |||| ||||||||  |||||| ||||||||||||||||||||||| | |  ||||| |  |||||  |    ||| ||||| |||    
T  26909179 agatgaaagagaatagagtttcaagtgttgaagacatgtgcttctcagaatcaattttggcaaacctaatagcccaacacaattttgaatcactacatct 26909080  T
Q  110 tgcatcatacacggagaatcactctcaagcaatggcaattgggaactttcaccaagcccatagatattcannnnnnnnattgaagacaaccaatgcagag 209  Q
    ||||||||||| ||||||||||||| |||||||| ||||  ||  |||| ||||||||||| |||||| |        || || |||| |||||| | ||    
T  26909079 tgcatcatacagggagaatcactcttaagcaatgacaatatggtccttttaccaagcccatggatattaattttcggtatggacgacacccaatgtaaag 26908980  T
Q  210 tagatggtgtttccaatagatgagaacaaccttctatttcaatttcttctatgcaaggaagatgactaggcaaa 283  Q
    ||||||||||||||||||||||| | ||||||| |||| |||||||||||||||||||||| |  |||||||||    
T  26908979 tagatggtgtttccaatagatgatagcaaccttttattacaatttcttctatgcaaggaaggttgctaggcaaa 26908906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 284
Target Start/End: Complemental strand, 11487148 - 11487052
Alignment:
Q  188 attgaagacaaccaatgcagagtagatggtgtttccaatagatgagaacaaccttctatttcaatttcttctatgcaaggaagatgactaggcaaat 284  Q
    ||||| ||||||||||||| || ||||||||||||||| ||||| | |||||||  ||| | ||||| ||||||||||||||| || ||||||||||    
T  11487148 attgacgacaaccaatgcaaagcagatggtgtttccaaaagatgggcacaacctgttatattaattttttctatgcaaggaaggtggctaggcaaat 11487052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 44955662 - 44955727
Alignment:
Q  217 tgtttccaatagatgagaacaaccttctatttcaatttcttctatgcaaggaagatgactaggcaa 282  Q
    ||||||||||||||||| |||| ||| ||||||||||||||||||| ||| ||||||||| |||||    
T  44955662 tgtttccaatagatgagcacaatcttttatttcaatttcttctatggaagaaagatgacttggcaa 44955727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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