View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12913_high_38 (Length: 274)
Name: NF12913_high_38
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12913_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 55574813 - 55574547
Alignment:
| Q |
1 |
agctgcatcacattagataacctgagatgtgatgcagctatatcattcaatctaaagatgagaatagcttaaatttagataaaggatcgaaccttttccg |
100 |
Q |
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| T |
55574813 |
agctgcatcacattagataacctgagatgtgatgcagctatatcattcaatctaaagatgagaatagcttaaatttagataaaggatcgaaccttttccg |
55574714 |
T |
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| Q |
101 |
atacagcaaaagcagcttgcactggagtcattccttggaaaggaagcagagcagttgtgagttcccaaagcacaattccaaaactataaacatcaacttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55574713 |
atacagcaaaagcagcttgcactggagtcattccttggaaaggaagcagagcagttgtgagttcccaaagcacaattccaaaactataaacatcaacttt |
55574614 |
T |
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| Q |
201 |
acgagtatacggtttttccttaatcatctcaggtgccatccaacgataagttcccatgtttcctttg |
267 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
55574613 |
acgagtatacggtttttccttaatcatctcaggcgccatccaacgataagttcccatgtttcctttg |
55574547 |
T |
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