View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12913_high_46 (Length: 248)
Name: NF12913_high_46
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12913_high_46 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 51686999 - 51687240
Alignment:
| Q |
7 |
gataatactaataactaaccaaacatattttcattgcatttgtattactacaaaccaaacatggcaaaaggtggaaagctaatgaagctaaaatcagcac |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51686999 |
gataatactaataactaaccaaacatattttcattgcatttgtattactacaaaccaaacatggcaaaaggtggaaagctaatgaagctaaaatcagcac |
51687098 |
T |
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| Q |
107 |
tcaaaaaatggaactcatttggaaacggaaaacagagccgtcacagcatcagcgccgtcgccgacgaagactcatcgtcttcaagatccgacctccacac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51687099 |
tcaaaaaatggaactcatttggaaacggaaaacagagccgtcacagcatcagcgccgtcgccgacgaagactcatcgtcttcaagatccgacctccacac |
51687198 |
T |
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| Q |
207 |
cgtcttcgtaggaaaatctcgccgcctctaccgtgtcacctc |
248 |
Q |
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| T |
51687199 |
cgtcttcgtaggaaagtctcgccgcctctaccgtgtcacctc |
51687240 |
T |
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