View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12913_high_55 (Length: 213)
Name: NF12913_high_55
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12913_high_55 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 20815216 - 20815042
Alignment:
| Q |
19 |
tcaaacacaaatgatataaaagtacgttgaatatcatatttggccattttaataaaagagattttaaaggatgcatgtctcagagtaaaagtcttagccc |
118 |
Q |
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| T |
20815216 |
tcaaacacaaatgatatgaaagtacgttaaatattatatttggccattttaataaaagagattttgaaggctgcatgtgtcacagtaaaagtcttagtcc |
20815117 |
T |
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| Q |
119 |
ccaattccaaaactaggaaacataagtcaagtccacgtatgtatgtttttctattgtccatccaaacacaagaac |
193 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20815116 |
ccaattccacaactaggaaacataagtcaagtccacgtatgtatgtttttctattgtccatccaaacacaagaac |
20815042 |
T |
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