View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12913_high_8 (Length: 541)
Name: NF12913_high_8
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12913_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 16 - 527
Target Start/End: Complemental strand, 10982213 - 10981706
Alignment:
| Q |
16 |
cagttttacctatgacagaatgtatatagcttgctaagaatgtggccttgagtccaccggctagtgtatagacaattactccaagtggtattagaaagct |
115 |
Q |
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| T |
10982213 |
cagttatacctatgacagaatgtatatagcttgctaagaatgtggccttgagtccaccggctagtgtatagacaattactccaagtggtattagaaagct |
10982114 |
T |
|
| Q |
116 |
agcagcataaatgttgactccagttaatgcatttacaacagcagaaccaccgagaagtaacatagccgttacaattatatttgtcatgaagcagaagaaa |
215 |
Q |
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| T |
10982113 |
agcagcataaatgttgactccagttaatgcatttacaacagcagaaccaccgagaagtaacatagccgttacaattatatttgtcatgaagcagaagaaa |
10982014 |
T |
|
| Q |
216 |
aggaacacaatgtgtgccgaagttccccaactgaggtaaacaagcattgttactacattacaataacaaaacaaaacaaa-aattcgctaaataggtttt |
314 |
Q |
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| T |
10982013 |
aggaacacaatgtgtgccgaagtcccccaactgaggtaaacaagcattgttactacattacaataacaaaacaaaaaaaagaattcgctaaataggtttt |
10981914 |
T |
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| Q |
315 |
acagacatgtttgatcatacttcattatctttcgacatcataatattacttcttaaaacttgtttacactgtgacataataatgaaatatgatcatagaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| || | |
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| T |
10981913 |
acagacatgtttgatcatacttcattatctttcgacatcataatattacttcttgaaatttgtttacac--tgacataataatgaaatatgatcgta-ca |
10981817 |
T |
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| Q |
415 |
tctgtgtnnnnnnnnngcaacataccgagctttgacaatttcacacacagtatgagcatacggagcctttcttttaatctctatagccataattccaaat |
514 |
Q |
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| T |
10981816 |
tctgtgt--aaaaaaagcaacataccgagctttgacaatttcacacacagtatgagcatacggagcctttcttttaatctctatagccataattccaaat |
10981719 |
T |
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| Q |
515 |
aacattacctgat |
527 |
Q |
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| T |
10981718 |
aacattacctgat |
10981706 |
T |
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