View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12913_high_9 (Length: 526)

Name: NF12913_high_9
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12913_high_9
NF12913_high_9
[»] chr2 (40 HSPs)
chr2 (11-508)||(9062070-9062567)
chr2 (126-500)||(9290871-9291253)
chr2 (146-508)||(9315001-9315369)
chr2 (301-499)||(9285084-9285285)
chr2 (205-326)||(9297502-9297626)
chr2 (294-500)||(9318626-9318843)
chr2 (183-280)||(9285281-9285378)
chr2 (224-371)||(7117042-7117187)
chr2 (396-508)||(9287784-9287892)
chr2 (122-255)||(9069171-9069310)
chr2 (396-501)||(11425278-11425379)
chr2 (48-255)||(9076768-9077000)
chr2 (396-508)||(10371016-10371124)
chr2 (397-500)||(9271903-9272002)
chr2 (399-498)||(9273249-9273344)
chr2 (396-507)||(10334914-10335021)
chr2 (413-507)||(10346906-10346996)
chr2 (14-122)||(9069333-9069444)
chr2 (208-280)||(9286194-9286266)
chr2 (396-500)||(9326604-9326707)
chr2 (180-271)||(9326396-9326482)
chr2 (321-374)||(9273159-9273212)
chr2 (66-122)||(9314897-9314953)
chr2 (14-122)||(8574682-8574795)
chr2 (38-122)||(9290755-9290844)
chr2 (439-498)||(7116943-7117002)
chr2 (396-439)||(8574414-8574457)
chr2 (321-380)||(9069074-9069133)
chr2 (295-374)||(9076682-9076756)
chr2 (122-196)||(8574583-8574656)
chr2 (451-500)||(10351403-10351452)
chr2 (316-380)||(10340546-10340609)
chr2 (396-489)||(10340637-10340730)
chr2 (451-498)||(12007142-12007189)
chr2 (316-374)||(10351265-10351322)
chr2 (335-380)||(8574485-8574530)
chr2 (447-500)||(9076551-9076604)
chr2 (171-260)||(9318530-9318619)
chr2 (75-115)||(9290882-9290922)
chr2 (451-499)||(9363719-9363767)
[»] chr3 (1 HSPs)
chr3 (294-499)||(37461474-37461687)
[»] chr8 (1 HSPs)
chr8 (396-498)||(41968296-41968395)
[»] scaffold0667 (2 HSPs)
scaffold0667 (183-271)||(1544-1633)
scaffold0667 (447-498)||(1794-1845)
[»] chr4 (1 HSPs)
chr4 (396-507)||(26574149-26574256)
[»] chr1 (3 HSPs)
chr1 (455-498)||(29422436-29422479)
chr1 (455-498)||(29454250-29454293)
chr1 (451-489)||(29444252-29444290)


Alignment Details
Target: chr2 (Bit Score: 466; Significance: 0; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 11 - 508
Target Start/End: Complemental strand, 9062567 - 9062070
Alignment:
Q  11 cagagacttacacacacaatgaagagagacacaacgtcacaaacaaacgcgcacaaaaggagcaatacttttcatataataaccaacctcgttgtgcttt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9062567 cagagacttacacacacaatgaagagagacacaacgtcacaaacaaacgcgcacaaaaggagcaatacttttcatataataaccaacctcattgtgcttt 9062468  T
Q  111 catatgcatgttaatggaaataaaagacactctttatacaataaccaacctcattgtgctttccatacattctcaacagtactagaagtaaaatataaaa 210  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  9062467 catacgcatgttaatggaaataaaagacactttttatacaataaccaacctcattgtgctttccatatattcgcaacagtactagaagtaaaatataaaa 9062368  T
Q  211 gcaaatgatccttttagataggccagagggagagaggattcatcatcaaattcttcacaccttaatgtgagatttttacacaaggataagtgtgatctca 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9062367 gcaaatgatccttttagataggccagagggagagaggattcatcatcaaattcttcacaccttaatgtgagatttttacacaaggataagtgtgatctca 9062268  T
Q  311 gacttacaactcaaaatgagagataaaaatgggtgcagccccattcattatcaattcaacctttgccacagaccttcattgccaaaaacaacttgagcat 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9062267 gacttacaactcaaaatgagagataaaaatgggtgcagccccattcattatcaattcaacctttgccacagaccttcattaccaaaaacaacttgagcat 9062168  T
Q  411 cttgtttcagctgcacatcataggtccttccttccatccatcccttacaatttcagtttaaatcctcgggacaagaagtcgtccctgtggggaaaaaa 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  9062167 cttgtttcagctgcacatcataggtccttccttccatccatcccttacaatttcagtttaaatcctcgggacaagaagtcgtccctgtgagaaaaaaa 9062070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 126 - 500
Target Start/End: Original strand, 9290871 - 9291253
Alignment:
Q  126 ggaaataaaagacactctttatacaataaccaacctcattgtgctttccatacattctcaacagtactagaagtaaaatataaaagcaaatgatcctttt 225  Q
    |||||||||||| ||| || |||||||||||||||||||||||||| |||||  | |||||||||||||||||||||| | ||||||| | |   |||||    
T  9290871 ggaaataaaagatacttttcatacaataaccaacctcattgtgctt-ccatatttcctcaacagtactagaagtaaaagacaaaagcagaagt--ctttt 9290967  T
Q  226 agataggccagagggagagaggattcatcatcaaattcttcacaccttaatgtgagatttttacacaa---ggataagtgtgatctcagacttacaactc 322  Q
    ||||||| |||||||||||||| |||||||||||||||| || ||| |||||| ||||||||||||||   |||||||||||||||||||| ||||| ||    
T  9290968 agataggtcagagggagagagggttcatcatcaaattctacataccctaatgtcagatttttacacaagagggataagtgtgatctcagacatacaattc 9291067  T
Q  323 aaaatgagagataaaaatgggtgcagccccattcattatcaattcaacctttgccacagacc------------ttcattgccaaaaacaac--ttgagc 408  Q
    ||||  ||||| |||||||| |||||| || |||| |||||||||||||||  ||||| |||            | |||  | | |||||||  |||||     
T  9291068 aaaa--agagagaaaaatggatgcagctcctttcaatatcaattcaaccttccccacaaaccaaggtaactaattccatcacaacaaacaacttttgaga 9291165  T
Q  409 atcttgtttcagctgcacatcataggtccttccttccatccatcccttacaatttcagtttaaatcctcgggacaagaagtcgtccctgtgg 500  Q
    ||| |||||||||||||||||| ||| |||| ||    ||||||||||||||| ||| |||||||||||||||||||||||| |||||||||    
T  9291166 atcctgtttcagctgcacatcacaggcccttact----tccatcccttacaatctcaatttaaatcctcgggacaagaagtcctccctgtgg 9291253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 146 - 508
Target Start/End: Original strand, 9315001 - 9315369
Alignment:
Q  146 atacaataaccaacctcattgtgctttccatacattctcaacagtactagaagtaaaatataaaagcaaatgatccttttagataggccagagggagaga 245  Q
    |||||||||||||||||| ||||||| |||||  |||||||| || |||||| ||||| | ||  |||   |||||||||||| ||||||||||||||||    
T  9315001 atacaataaccaacctcactgtgctt-ccatattttctcaacggtgctagaattaaaagacaa--gcagcagatccttttagaaaggccagagggagaga 9315097  T
Q  246 ggattcatcatcaaattcttcacaccttaatgtgagatttttacacaa---ggataagtgtgatctcagacttacaactcaaaatgagagataaaaatgg 342  Q
    |||||||||||||||||||  | ||| |||||| | ||||||||| ||   |||||||||||||||||||| |||||  ||| | |||||| |||||||     
T  9315098 ggattcatcatcaaattctaaataccctaatgtcatatttttacaaaagagggataagtgtgatctcagacatacaatccaagaagagaga-aaaaatga 9315196  T
Q  343 gtgcagccccattcattatcaattcaacctttgccacagacc------------ttcattgccaaaaacaacttgagcatcttgtttcagctg---caca 427  Q
    ||||||| ||||||||||||||||||||| || ||||| |||            | |||  | | |||||| ||||||||| |||||||||||   ||||    
T  9315197 gtgcagctccattcattatcaattcaaccattcccacaaaccaagcagactaattccatcacaagaaacaagttgagcatcatgtttcagctgctacaca 9315296  T
Q  428 tcataggtccttccttccatccatcccttacaatttcagtttaaatcctcgggacaagaagtcgtccctgtggggaaaaaa 508  Q
    ||| |||        ||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||| || ||||||    
T  9315297 tcacagg--------tccctccatcccttacaatctcaatttaaatcctcgggacaagaagtcgtccctgttggaaaaaaa 9315369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 301 - 499
Target Start/End: Complemental strand, 9285285 - 9285084
Alignment:
Q  301 tgtgatctcagacttacaactcaaaatgagagataaaaatgggtgcagccccattcattatcaattcaacctttgccaca----gacc---ttcattgcc 393  Q
    ||||||||||||||||||| ||||||||||| ||||||||| ||||||| ||||  |||||||||||||| ||| |||||    |||    | |||  |     
T  9285285 tgtgatctcagacttacaattcaaaatgagatataaaaatgtgtgcagctccatgaattatcaattcaacatttcccacaagatgactaattccatcaca 9285186  T
Q  394 aaaaacaacttgagcatcttgtttcagctgcacatcataggtccttccttccatccatcccttacaatttcagtttaaatcctcgggacaagaagtcgtc 493  Q
    | |||| ||||||||||| |||||||||||||||||| ||||||||||||||||||    |||||||| ||| ||||||||||| |||||||||||||||    
T  9285185 agaaactacttgagcatcatgtttcagctgcacatcacaggtccttccttccatcc----cttacaatctcaatttaaatcctccggacaagaagtcgtc 9285090  T
Q  494 cctgtg 499  Q
    ||||||    
T  9285089 cctgtg 9285084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 205 - 326
Target Start/End: Original strand, 9297502 - 9297626
Alignment:
Q  205 ataaaagcaaatgatccttttagataggccagagggagagaggattcatcatcaaattcttcacaccttaatgtgagatttttacacaa---ggataagt 301  Q
    ||||||||| | |||||||||||| |||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||   |||||| |    
T  9297502 ataaaagcagaagatccttttagaaaggccagagggagagaggattcctcatcaaattcttcacactctaatgtgagatttttacacaagagggataact 9297601  T
Q  302 gtgatctcagacttacaactcaaaa 326  Q
    |||||||||||| ||||| ||||||    
T  9297602 gtgatctcagacatacaattcaaaa 9297626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 294 - 500
Target Start/End: Original strand, 9318626 - 9318843
Alignment:
Q  294 ggataagtgtgatctcagacttacaactcaaaatgagagataaaaatgggtgcagccccattcattatcaattcaacctttgccacagacc-----ttc- 387  Q
    |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||||| |||||||||||||||||| ||||| ||||| |||     |||     
T  9318626 ggataaatgtgatctcagacatacaattcaaaatgagatgtaaaaatgggtgcagctccattcattatcaattcagcctttcccacaaaccaaggtttct 9318725  T
Q  388 -attgc----caa-aaacaacttgagcatcttgtttcagctgc---acatcataggtccttccttccatccatcccttacaatttcagtttaaatcctcg 478  Q
     ||| |    ||| |||||||||||| ||| ||||||||||||   |||||| |||||||||||||||    ||||||||||| ||| ||||||||||||    
T  9318726 aattccatcacaagaaacaacttgagtatcctgtttcagctgctgcacatcacaggtccttccttcca----tcccttacaatctcaatttaaatcctcg 9318821  T
Q  479 ggacaagaagtcgtccctgtgg 500  Q
    ||||||||||||||||||||||    
T  9318822 ggacaagaagtcgtccctgtgg 9318843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 183 - 280
Target Start/End: Complemental strand, 9285378 - 9285281
Alignment:
Q  183 tcaacagtactagaagtaaaatataaaagcaaatgatccttttagataggccagagggagagaggattcatcatcaaattcttcacaccttaatgtga 280  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||  ||||||||    
T  9285378 tcaacagtactagaagtagaatataaaagcaaataatccttttagaaaggccagagggagagaggattcataatcaaattcttcacacactaatgtga 9285281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 224 - 371
Target Start/End: Complemental strand, 7117187 - 7117042
Alignment:
Q  224 ttagataggccagagggagagaggattcatcatcaaattcttcacaccttaatgtgagatttttaca--caaggataagtgtgatctcagacttacaact 321  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||     |||||| ||||||||| |    |||| |    
T  7117187 ttagagaggccagagggagagaggattcatcatcaaattcttcacatcctaatgtgagatttttacaaggtgggataaatgtgatctcgg----acaatt 7117092  T
Q  322 caaaatgagagataaaaatgggtgcagccccattcattatcaattcaacc 371  Q
    ||||||||||||||||||||||  |||| ||||||||||| |||||||||    
T  7117091 caaaatgagagataaaaatgggcacagctccattcattattaattcaacc 7117042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 396 - 508
Target Start/End: Original strand, 9287784 - 9287892
Alignment:
Q  396 aaacaacttgagcatcttgtttcagctgcacatcataggtccttccttccatccatcccttacaatttcagtttaaatcctcgggacaagaagtcgtccc 495  Q
    |||||||||||||||| |||||||||||||||||| |||| ||||    ||||||||||||||||| ||| |||||||||||||||||| |||||||||     
T  9287784 aaacaacttgagcatcctgtttcagctgcacatcacaggtacttc----catccatcccttacaatctcaatttaaatcctcgggacaaaaagtcgtcct 9287879  T
Q  496 tgtggggaaaaaa 508  Q
    |||||| ||||||    
T  9287880 tgtgggaaaaaaa 9287892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 122 - 255
Target Start/End: Complemental strand, 9069310 - 9069171
Alignment:
Q  122 taatggaaataaaagacactctttatacaataaccaacctcattgtgctttccatacattctcaacagta-------ctagaagtaaaatataaaagcaa 214  Q
    |||||||||||||||| ||  |||||||||||||||||||||||||||||| ||||  ||||||||||||       |||||||||||| | |||||||     
T  9069310 taatggaaataaaagatacgttttatacaataaccaacctcattgtgcttt-catattttctcaacagtactagagtctagaagtaaaagacaaaagcag 9069212  T
Q  215 atgatccttttagataggccagagggagagaggattcatca 255  Q
    | ||||| |||||| ||||||||||||||||||||||||||    
T  9069211 aagatccatttagaaaggccagagggagagaggattcatca 9069171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 396 - 501
Target Start/End: Complemental strand, 11425379 - 11425278
Alignment:
Q  396 aaacaacttgagcatcttgtttcagctgcacatcataggtccttccttccatccatcccttacaatttcagtttaaatcctcgggacaagaagtcgtccc 495  Q
    |||||||| ||| ||| |||||||||||||||||| |||||| |||||||||||    |||||||| ||| |||||||||||||||||||||||||||||    
T  11425379 aaacaactcgagtatcctgtttcagctgcacatcacaggtccatccttccatcc----cttacaatgtcaatttaaatcctcgggacaagaagtcgtccc 11425284  T
Q  496 tgtggg 501  Q
    ||||||    
T  11425283 tgtggg 11425278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 48 - 255
Target Start/End: Complemental strand, 9077000 - 9076768
Alignment:
Q  48 cacaaacaaacgcgcacaaaaggagcaatacttttcatataataaccaacctcgttgtgctttcatatgcat-------------------gttaatgga 128  Q
    |||||||||| | |||| |||||||||||||||||||||  |||||||||||| ||||||||||||| ||||                   | |||| ||    
T  9077000 cacaaacaaatgtgcacgaaaggagcaatacttttcatactataaccaacctcattgtgctttcataagcatgctgtgtttggaatttagagataatcga 9076901  T
Q  129 aataaaagacactctttatacaataaccaacctcattgtgctttccatacattctcaacagta-------ctagaagtaaaatataaaagcaaatgatcc 221  Q
    ||||||||| ||| |||||||||||| || ||||||||||| |||||||  ||||||||||||       |||||||||||| ||||| ||| | |||||    
T  9076900 aataaaagatactttttatacaataatcatcctcattgtgc-ttccatattttctcaacagtactagagtctagaagtaaaagataaaggcagaagatcc 9076802  T
Q  222 ttttagataggccagagggagagaggattcatca 255  Q
    ||||||| ||||||||||||||||||||||||||    
T  9076801 ttttagaaaggccagagggagagaggattcatca 9076768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 396 - 508
Target Start/End: Original strand, 10371016 - 10371124
Alignment:
Q  396 aaacaacttgagcatcttgtttcagctgcacatcataggtccttccttccatccatcccttacaatttcagtttaaatcctcgggacaagaagtcgtccc 495  Q
    |||||||| ||||||| |||||||||||||| ||| | || ||||||||||    ||||||||| | ||| |||||||||||||||||| ||||||||||    
T  10371016 aaacaactggagcatcctgtttcagctgcacttcacacgttcttccttcca----tcccttacagtctcaatttaaatcctcgggacaaaaagtcgtccc 10371111  T
Q  496 tgtggggaaaaaa 508  Q
    |||||| ||||||    
T  10371112 tgtgggaaaaaaa 10371124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 397 - 500
Target Start/End: Original strand, 9271903 - 9272002
Alignment:
Q  397 aacaacttgagcatcttgtttcagctgcacatcataggtccttccttccatccatcccttacaatttcagtttaaatcctcgggacaagaagtcgtccct 496  Q
    ||||||||||  ||| |||||||||||||||||| | ||||||| |||||    ||||||||||| ||| ||||||||||||||||||||||||| ||||    
T  9271903 aacaacttgattatcctgtttcagctgcacatcacatgtccttctttcca----tcccttacaatctcaatttaaatcctcgggacaagaagtcgaccct 9271998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 399 - 498
Target Start/End: Original strand, 9273249 - 9273344
Alignment:
Q  399 caacttgagcatcttgtttcagctgcacatcataggtccttccttccatccatcccttacaatttcagtttaaatcctcgggacaagaagtcgtccctgt 498  Q
    ||||||||||||| ||||  ||||||| |||| |||||||||||||||||| ||    ||||| ||| ||||||||||||||||||||||||||||||||    
T  9273249 caacttgagcatcgtgttaaagctgcatatcacaggtccttccttccatccctc----acaatctcaatttaaatcctcgggacaagaagtcgtccctgt 9273344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 396 - 507
Target Start/End: Original strand, 10334914 - 10335021
Alignment:
Q  396 aaacaacttgagcatcttgtttcagctgcacatcataggtccttccttccatccatcccttacaatttcagtttaaatcctcgggacaagaagtcgtccc 495  Q
    |||||||| ||||||| |||||||||||||| ||| | || ||||||||||    ||||||||| | ||| |||||||||||||||||||||||| ||||    
T  10334914 aaacaactggagcatcctgtttcagctgcacttcacacgttcttccttcca----tcccttacagtctcaatttaaatcctcgggacaagaagtcatccc 10335009  T
Q  496 tgtggggaaaaa 507  Q
    ||||| ||||||    
T  10335010 tgtggagaaaaa 10335021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 413 - 507
Target Start/End: Original strand, 10346906 - 10346996
Alignment:
Q  413 tgtttcagctgcacatcataggtccttccttccatccatcccttacaatttcagtttaaatcctcgggacaagaagtcgtccctgtggggaaaaa 507  Q
    |||||||||||||| ||| ||||||||||| ||||    |||||||||| ||| |||||||||||||||||||||||| |||||||||| |||||    
T  10346906 tgtttcagctgcacttcacaggtccttcctaccat----cccttacaatctcaatttaaatcctcgggacaagaagtcatccctgtgggaaaaaa 10346996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 9069444 - 9069333
Alignment:
Q  14 agacttacacacacaatgaagagag-acacaacgtca--caaacaaacgcgcacaaaaggagcaatacttttcatataataaccaacctcgttgtgcttt 110  Q
    ||||||||| ||||| ||||||| | |||||||||||  ||||||||||||||  ||||||||||||||||||||| | |||||||||||  ||||||||    
T  9069444 agacttacatacacagtgaagaggggacacaacgtcatacaaacaaacgcgcaagaaaggagcaatacttttcatacagtaaccaacctcaatgtgcttt 9069345  T
Q  111 catatgcatgtt 122  Q
    |||  |||||||    
T  9069344 cattagcatgtt 9069333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 9286194 - 9286266
Alignment:
Q  208 aaagcaaatgatccttttagataggccagagggagagaggattcatcatcaaattcttcacaccttaatgtga 280  Q
    |||||| | |||||||||||| ||||||||||||||||||||||||||||||| |||| | ||| ||||||||    
T  9286194 aaagcagaagatccttttagaaaggccagagggagagaggattcatcatcaaactctttataccctaatgtga 9286266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 396 - 500
Target Start/End: Original strand, 9326604 - 9326707
Alignment:
Q  396 aaacaacttgagcatcttgtttcagctgc---acatcataggtccttccttccatccatcccttacaatttcagtttaaatcctcgggacaagaagtcgt 492  Q
    |||||||||||| ||| ||| ||||||||   |||||| ||||||||||||| ||||    |||||||  ||| ||||||||||||||||||||||||||    
T  9326604 aaacaacttgagtatcctgtatcagctgctgcacatcacaggtccttccttctatcc----cttacaacctcaatttaaatcctcgggacaagaagtcgt 9326699  T
Q  493 ccctgtgg 500  Q
    ||||||||    
T  9326700 ccctgtgg 9326707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 9326396 - 9326482
Alignment:
Q  180 ttctcaacagtactagaagtaaaatataaaagcaaatgatccttttagataggccagagggagagaggattcatcatcaaattcttcacacc 271  Q
    |||||||||||||||||||||||| |||||||||   |||| ||||||| |||||| |||  | || |||||||||||||||||||||||||    
T  9326396 ttctcaacagtactagaagtaaaagataaaagca---gatctttttagaaaggccaaagg--gggatgattcatcatcaaattcttcacacc 9326482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 374
Target Start/End: Original strand, 9273159 - 9273212
Alignment:
Q  321 tcaaaatgagagataaaaatgggtgcagccccattcattatcaattcaaccttt 374  Q
    ||||||||||||| |||||||| |||||| ||||||||||||||||||||||||    
T  9273159 tcaaaatgagagacaaaaatggatgcagctccattcattatcaattcaaccttt 9273212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 9314897 - 9314953
Alignment:
Q  66 aaaggagcaatacttttcatataataaccaacctcgttgtgctttcatatgcatgtt 122  Q
    ||||||||||||||||||||| |||||||||||||  |||||||||||| |||||||    
T  9314897 aaaggagcaatacttttcatacaataaccaacctcaatgtgctttcataagcatgtt 9314953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 8574795 - 8574682
Alignment:
Q  14 agacttacacacacaatgaaga-gagacacaacgt----cacaaacaaacgcgcacaaaaggagcaatacttttcatataataaccaacctcgttgtgct 108  Q
    ||||||||||||||| |||||| | ||||||| ||    ||||||||||||||||| ||| |||||||||| ||| || |||| |||||| | |||||||    
T  8574795 agacttacacacacagtgaagaggggacacaatgtcacacacaaacaaacgcgcacgaaatgagcaatactcttcgtacaatatccaaccactttgtgct 8574696  T
Q  109 ttcatatgcatgtt 122  Q
    ||| || |||||||    
T  8574695 ttcttaagcatgtt 8574682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 9290755 - 9290844
Alignment:
Q  38 gacacaacgtcaca--aacaaacgcgcacaaaaggagcaatacttttcat---ataataaccaacctcgttgtgctttcatatgcatgtt 122  Q
    ||||||||||||||  ||||||| ||||| ||||||||| ||||||||||   ||||||||||||| ||||||||| ||||  |||||||    
T  9290755 gacacaacgtcacacaaacaaacacgcacgaaaggagcactacttttcatacaataataaccaaccgcgttgtgctgtcatcagcatgtt 9290844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 439 - 498
Target Start/End: Complemental strand, 7117002 - 7116943
Alignment:
Q  439 tccttccatccatcccttacaatttcagtttaaatcctcgggacaagaagtcgtccctgt 498  Q
    ||||||| ||||||||||||||| ||| ||||||||||  |||||||||||| |||||||    
T  7117002 tccttccttccatcccttacaatctcaatttaaatcctttggacaagaagtcctccctgt 7116943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 396 - 439
Target Start/End: Complemental strand, 8574457 - 8574414
Alignment:
Q  396 aaacaacttgagcatcttgtttcagctgcacatcataggtcctt 439  Q
    |||||||||||||||| |||||||||||||||||| ||||||||    
T  8574457 aaacaacttgagcatcctgtttcagctgcacatcacaggtcctt 8574414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 321 - 380
Target Start/End: Complemental strand, 9069133 - 9069074
Alignment:
Q  321 tcaaaatgagagataaaaatgggtgcagccccattcattatcaattcaacctttgccaca 380  Q
    ||||||||||  |||||||||||||||||  ||||| ||||||||||||||||| |||||    
T  9069133 tcaaaatgagccataaaaatgggtgcagcttcattctttatcaattcaacctttcccaca 9069074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 295 - 374
Target Start/End: Complemental strand, 9076756 - 9076682
Alignment:
Q  295 gataagtgtgatctcagacttacaactcaaaatgagagataaaaatgggtgcagccccattcattatcaattcaaccttt 374  Q
    ||||||||||||||||     |||| ||||||||||  ||| ||||||||||||  ||||||||||||||||||||||||    
T  9076756 gataagtgtgatctca-----acaattcaaaatgagccatagaaatgggtgcagttccattcattatcaattcaaccttt 9076682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 8574656 - 8574583
Alignment:
Q  122 taatggaaataaaagacactctttatacaataaccaacctcattgtgctttccatacattctcaacagtactaga 196  Q
    ||||||||||||||||  || || ||||| |||||||||||||||||| |||||||  || ||||||||||||||    
T  8574656 taatggaaataaaagattcttttcatacactaaccaacctcattgtgc-ttccatattttttcaacagtactaga 8574583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 451 - 500
Target Start/End: Original strand, 10351403 - 10351452
Alignment:
Q  451 tcccttacaatttcagtttaaatcctcgggacaagaagtcgtccctgtgg 500  Q
    ||||||||||| ||| |||||||||||  |||||||||||||||||||||    
T  10351403 tcccttacaatctcaatttaaatcctccagacaagaagtcgtccctgtgg 10351452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 10340546 - 10340609
Alignment:
Q  316 acaactcaaaatgagagataaaaatgggtgcagccccattcattatcaattcaacctttgccaca 380  Q
    |||| |||||| ||| |||||||||||||||| | |||| ||||||||||||||||||| |||||    
T  10340546 acaattcaaaaagagggataaaaatgggtgcaactccat-cattatcaattcaacctttaccaca 10340609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 489
Target Start/End: Original strand, 10340637 - 10340730
Alignment:
Q  396 aaacaacttgagcatcttgtttcagctgcacatcat----aggtccttccttccatccatcccttacaatttcagtttaaatcctcgggacaagaagt 489  Q
    |||||||| ||||||| |||||||||||||| |||     |||||||||||||||    ||||||||| | ||| |||||||||||||||||| ||||    
T  10340637 aaacaactggagcatcctgtttcagctgcacttcactcacaggtccttccttcca----tcccttacagtctcaatttaaatcctcgggacaaaaagt 10340730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 498
Target Start/End: Complemental strand, 12007189 - 12007142
Alignment:
Q  451 tcccttacaatttcagtttaaatcctcgggacaagaagtcgtccctgt 498  Q
    ||||||||||  ||| ||||||||||||||||| ||||||||||||||    
T  12007189 tcccttacaaggtcaatttaaatcctcgggacaggaagtcgtccctgt 12007142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 374
Target Start/End: Original strand, 10351265 - 10351322
Alignment:
Q  316 acaactcaaaatgagagataaaaatgggtgcagccccattcattatcaattcaaccttt 374  Q
    |||| |||||| ||| |||||||||||||||| | ||| ||||||||||||||||||||    
T  10351265 acaaatcaaaaagagggataaaaatgggtgcaactcca-tcattatcaattcaaccttt 10351322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 380
Target Start/End: Complemental strand, 8574530 - 8574485
Alignment:
Q  335 aaaaatgggtgcagccccattcattatcaattcaacctttgccaca 380  Q
    ||||||||||||||| ||||||||| | |||||||||||| |||||    
T  8574530 aaaaatgggtgcagctccattcattgtaaattcaaccttttccaca 8574485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 500
Target Start/End: Complemental strand, 9076604 - 9076551
Alignment:
Q  447 tccatcccttacaatttcagtttaaatcctcgggacaagaagtcgtccctgtgg 500  Q
    ||||||||||||||| ||| ||||||||||  |||||||||| | |||||||||    
T  9076604 tccatcccttacaatctcaatttaaatcctttggacaagaagccatccctgtgg 9076551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 260
Target Start/End: Original strand, 9318530 - 9318619
Alignment:
Q  171 ttccatacattctcaacagtactagaagtaaaatataaaagcaaatgatccttttagataggccagagggagagaggattcatcatcaaa 260  Q
    |||||||  |||||| |||||||||||| || |   ||||||| | |||||||| ||| ||| |||||||||||||||| ||||| ||||    
T  9318530 ttccatattttctcagcagtactagaagcaagaggcaaaagcagacgatcctttaagaaaggtcagagggagagaggatgcatcaccaaa 9318619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 9290882 - 9290922
Alignment:
Q  75 atacttttcatataataaccaacctcgttgtgctttcatat 115  Q
    |||||||||||| ||||||||||||| |||||||| |||||    
T  9290882 atacttttcatacaataaccaacctcattgtgcttccatat 9290922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 451 - 499
Target Start/End: Original strand, 9363719 - 9363767
Alignment:
Q  451 tcccttacaatttcagtttaaatcctcgggacaagaagtcgtccctgtg 499  Q
    |||||||||||  || |||||||||| ||||||||||||| ||||||||    
T  9363719 tcccttacaatgacaatttaaatccttgggacaagaagtcatccctgtg 9363767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 294 - 499
Target Start/End: Original strand, 37461474 - 37461687
Alignment:
Q  294 ggataagtgtgatctcagacttacaactcaaaatgagagataaaaatgggtgcagccccattcattatcaattcaacctttgccacagacc--------- 384  Q
    |||||||||| || |||||| ||||| ||||||||||| ||| ||||| ||||||| |||||||||||||||||||||||  ||||| |||             
T  37461474 ggataagtgtaatatcagacatacaattcaaaatgagaaatacaaatgcgtgcagctccattcattatcaattcaaccttacccacaaaccaaggagact 37461573  T
Q  385 ---ttcattgccaaaaacaacttgagcatcttgtttcagctgcacatcataggtccttccttccatccatcccttacaatttcagtttaaatcctcggga 481  Q
       | |||  | | |||||||||||||| | |||||||||||||||| | |||| ||||||    |||| |||||||||| ||| ||||||||||| |||    
T  37461574 aattccatcacaagaaacaacttgagcaccctgtttcagctgcacattacaggttcttcct----tccaccccttacaatctcaatttaaatcctccgga 37461669  T
Q  482 caagaagtcgtccctgtg 499  Q
    |||||||| |||||||||    
T  37461670 caagaagtggtccctgtg 37461687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 396 - 498
Target Start/End: Complemental strand, 41968395 - 41968296
Alignment:
Q  396 aaacaacttgagcatcttg-tttcagctgcacatcataggtccttccttccatccatcccttacaatttcagtttaaatcctcgggacaagaagtcgtcc 494  Q
    |||||||||||||||| || |||||||||||||||| ||||||||||||||||||    |||||||| ||| |||||||||| ||||||||||||| |||    
T  41968395 aaacaacttgagcatcctggtttcagctgcacatcacaggtccttccttccatcc----cttacaatctcaatttaaatccttgggacaagaagtcatcc 41968300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 183 - 271
Target Start/End: Original strand, 1544 - 1633
Alignment:
Q  183 tcaacagtactagaagtaaaatataaaagcaaatgatccttttagata-ggccagagggagagaggattcatcatcaaattcttcacacc 271  Q
    |||| |||| ||||||||||  ||||||||| | ||||||||| || | |||||||| ||||||||||||||||||||||||||||||||    
T  1544 tcaatagtattagaagtaaaggataaaagcagacgatccttttcgaaaaggccagagagagagaggattcatcatcaaattcttcacacc 1633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 447 - 498
Target Start/End: Original strand, 1794 - 1845
Alignment:
Q  447 tccatcccttacaatttcagtttaaatcctcgggacaagaagtcgtccctgt 498  Q
    |||| |||||||||| ||| ||||||||||| ||||||||||||||||||||    
T  1794 tccaacccttacaatctcaatttaaatcctccggacaagaagtcgtccctgt 1845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 396 - 507
Target Start/End: Original strand, 26574149 - 26574256
Alignment:
Q  396 aaacaacttgagcatcttgtttcagctgcacatcataggtccttccttccatccatcccttacaatttcagtttaaatcctcgggacaagaagtcgtccc 495  Q
    |||||||| ||||||| |||||||||||||| ||| |||||||||| ||||||     |||||| | ||| ||||||| ||| |||||| ||||||||||    
T  26574149 aaacaactggagcatcctgtttcagctgcacttcacaggtccttccgtccatcg----cttacagtctcaatttaaattctctggacaaaaagtcgtccc 26574244  T
Q  496 tgtggggaaaaa 507  Q
    |||||| |||||    
T  26574245 tgtgggaaaaaa 26574256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 455 - 498
Target Start/End: Original strand, 29422436 - 29422479
Alignment:
Q  455 ttacaatttcagtttaaatcctcgggacaagaagtcgtccctgt 498  Q
    ||||||||||| |||||||||||||||||||||||| |||||||    
T  29422436 ttacaatttcaatttaaatcctcgggacaagaagtcatccctgt 29422479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 455 - 498
Target Start/End: Complemental strand, 29454293 - 29454250
Alignment:
Q  455 ttacaatttcagtttaaatcctcgggacaagaagtcgtccctgt 498  Q
    ||||||||||| |||||||||||||||||||||||| |||||||    
T  29454293 ttacaatttcaatttaaatcctcgggacaagaagtcatccctgt 29454250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 489
Target Start/End: Complemental strand, 29444290 - 29444252
Alignment:
Q  451 tcccttacaatttcagtttaaatcctcgggacaagaagt 489  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  29444290 tcccttacaatttcagtttaaatccttgggacaagaagt 29444252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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