View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12913_low_1 (Length: 962)

Name: NF12913_low_1
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12913_low_1
NF12913_low_1
[»] chr4 (15 HSPs)
chr4 (8-947)||(4121172-4122124)
chr4 (571-655)||(18151792-18151876)
chr4 (477-568)||(4347133-4347224)
chr4 (468-568)||(4118662-4118762)
chr4 (477-568)||(4363559-4363650)
chr4 (74-264)||(4363879-4364075)
chr4 (505-560)||(4131534-4131589)
chr4 (719-823)||(4118839-4118943)
chr4 (189-315)||(4131230-4131359)
chr4 (740-820)||(4363438-4363518)
chr4 (655-705)||(4337985-4338035)
chr4 (858-919)||(4337668-4337729)
chr4 (654-706)||(4118763-4118815)
chr4 (658-698)||(4363514-4363554)
chr4 (828-887)||(4119009-4119071)
[»] chr3 (2 HSPs)
chr3 (571-655)||(28372514-28372598)
chr3 (571-655)||(28380336-28380420)


Alignment Details
Target: chr4 (Bit Score: 869; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 869; E-Value: 0
Query Start/End: Original strand, 8 - 947
Target Start/End: Original strand, 4121172 - 4122124
Alignment:
Q  8 gagcagagacgcgaaggtttgaaattgtgggggcagtcacaagactgccaactagcaataacacctgatctttgatattgaggaaaattgtggaaaaatg 107  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4121172 gagcagagacgtgaaggtttgaaattgtgggggcagtcacaagactgccaactagcaataacacctgatctttgatattgaggaaaattgtggaaaaatg 4121271  T
Q  108 tagttgatgccacacaattgcaattgttgtgatgtggtggtcccaaactctgacattgtggctacaatcgcagtcacggagtacaattcaaaaatttggt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4121272 tagttgatgccacacaattgcaattgttgtgatgtggtggtcccaaactctgacattgtggctacaatcgcagtcacggagtacaattcaaaaatttggt 4121371  T
Q  208 gatatgataaggatgtgtacatctgcaatggataatgattctttctcttcaatgtttggcaagttttaaaaacacaaatttactgcagataacgatcaaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4121372 gatatgataaggatgtgtacatctgcaatggataatgattctttctcttcaatgtttggcaagttttaaaaacacaaatttactgcagataacgatcaaa 4121471  T
Q  308 gttaaaattttaaa-------------aatttattatcaagaaaggaaaaacctgtggccgacgaatatagtccagctgcagtcgggaagaagtttaacg 394  Q
    ||||||||||||||             ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4121472 gttaaaattttaaaaattcaatataaaaatttattatcaagaaaggaaaaacctgtggccaacgaatatagtccagctgcagtcgggaagaagtttaacg 4121571  T
Q  395 aaatattgtttgcagtcggcaggatgctcttgtgctcaacatcaagggtacaaactctcaaacagttctagagcttacccccagaaagagaaatccccta 494  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4121572 aaatattgtttgcagtcggcaggatgctcttatgctcaacatcaagggtacaaactctcaaacagttctagagcttacccccagaaagagaaatctccta 4121671  T
Q  495 cattagccaacaaaaccaaattccacaaatcaaaaatagaaatgaaaagaatgacaattctcaatgcaagcatcaaataaccgtcgaggtgatgtcttga 594  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4121672 cattagccaacaaaaccaaaatccacaaatctaaaatagaaatgaaaagaatgacaattctcaatgcaagcatcaaataaccgtcgaggtgacgtcttga 4121771  T
Q  595 cctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgagaatattggcacaccaatgaaaaatatgcatgctaaacaaaataat 694  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4121772 cctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgagaatattggcataccaatgaaaaatatgcatgctaaacaaaataat 4121871  T
Q  695 tcttcattcttacttcttagatattataacatgatactgcagttcttctttcctggcatttatttactcaatgcaatactcatgtctcctacattgtagg 794  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4121872 tcttcattcttacttcttagatagtataacatgatactgcagttcttctttcctggcatttatttactcaatgcaatactcatgtctcctacattgtagg 4121971  T
Q  795 agctcatagtaaaaatgagaaaatgcttattttagaaatgcctttcttttatgagtactggtatccaaattgaatgttaaaacatttttaaagcagtaat 894  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4121972 agctcatagtaaaaatgagaaaatgcttattttagaaatgcctttcttttatgagtactggtatccaaattgaatgttaaaacatttttaaagcagtaat 4122071  T
Q  895 taaaaaattagataaccaaaaaatacatattttgtgaggaccgatgaaaaact 947  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4122072 taaaaaattagataactaaaaaatacatattttgtgaggaccgatgaaaaact 4122124  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 571 - 655
Target Start/End: Complemental strand, 18151876 - 18151792
Alignment:
Q  571 ataaccgtcgaggtgatgtcttgacctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgagaatatt 655  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18151876 ataaccgtcgaggtgacgtcttgacctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgaggatatt 18151792  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 477 - 568
Target Start/End: Complemental strand, 4347224 - 4347133
Alignment:
Q  477 agaaagagaaatcccctacattagccaacaaaaccaaattccacaaatcaaaaatagaaatgaaaagaatgacaattctcaatgcaagcatc 568  Q
    ||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  4347224 agaaagagaaatctcctacactagccagcaaaaccaaattccacaaatcaaaaatagaaaggaaaagaatgacaattctcaatgcgagcatc 4347133  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 468 - 568
Target Start/End: Original strand, 4118662 - 4118762
Alignment:
Q  468 cttacccccagaaagagaaatcccctacattagccaacaaaaccaaattccacaaatcaaaaatagaaatgaaaagaatgacaattctcaatgcaagcat 567  Q
    ||||| |||||||||||||||| |||||| |  |||||||||| |||||||| |||| ||||||||||| ||||||| |||||| ||| |||||||||||    
T  4118662 cttacacccagaaagagaaatctcctacactgcccaacaaaactaaattccataaataaaaaatagaaaggaaaagagtgacaaatcttaatgcaagcat 4118761  T
Q  568 c 568  Q
    |    
T  4118762 c 4118762  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 477 - 568
Target Start/End: Complemental strand, 4363650 - 4363559
Alignment:
Q  477 agaaagagaaatcccctacattagccaacaaaaccaaattccacaaatcaaaaatagaaatgaaaagaatgacaattctcaatgcaagcatc 568  Q
    |||||| |||||| ||||||  ||||| |||||||||||  ||| ||||| ||||||||| |||||||||||||||||||||||||||||||    
T  4363650 agaaagggaaatctcctacaccagccagcaaaaccaaatcacaccaatcataaatagaaaggaaaagaatgacaattctcaatgcaagcatc 4363559  T

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Target: chr4; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 74 - 264
Target Start/End: Complemental strand, 4364075 - 4363879
Alignment:
Q  74 gatctttgatattgaggaaaattgtggaaaaatgtagttgatgccacacaattgcaattgttgtgatgtggt----ggtcccaaactc--tgacattgtg 167  Q
    |||||||||| || ||||||| ||  ||||||||  |||||||| |||||||||  ||||||||||||||||    |||| |||| ||  ||| |||| |    
T  4364075 gatctttgatgttaaggaaaactgaagaaaaatgaggttgatgcgacacaattgtgattgttgtgatgtggtcagtggtctcaaaatccttgatattgag 4363976  T
Q  168 gctacaatcgcagtcacggagtacaattcaaaaatttggtgatatgataaggatgtgtacatctgcaatggataatgattctttctcttcaatgttt 264  Q
    |||||||| | ||||  ||| ||||||| |||| |||||| || ||||||||||   || |||||||||||| |||| ||||||| |||||||||||    
T  4363975 gctacaattgaagtcgaggattacaatttaaaactttggtcatctgataaggatacatatatctgcaatggacaatggttctttcccttcaatgttt 4363879  T

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Target: chr4; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 505 - 560
Target Start/End: Original strand, 4131534 - 4131589
Alignment:
Q  505 caaaaccaaattccacaaatcaaaaatagaaatgaaaagaatgacaattctcaatg 560  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  4131534 caaaaccaaattccaccaatcaaaaatagaaaggaaaagaatgacaattctcaatg 4131589  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 719 - 823
Target Start/End: Original strand, 4118839 - 4118943
Alignment:
Q  719 tataacatgatactgcagttcttctttcctggcatttatttactcaatgcaatactcatgtctcctacattgtaggagctcatagtaaaaatgagaaaat 818  Q
    ||||| ||| ||||||||||||||| ||||| || ||||||||| ||||   |||| |||||||||||| || |||| || ||||| |||||||||||||    
T  4118839 tataatatgttactgcagttcttctatcctgccacttatttacttaatgtggtactgatgtctcctacactgcaggaactaatagttaaaatgagaaaat 4118938  T
Q  819 gctta 823  Q
    |||||    
T  4118939 gctta 4118943  T

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Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 315
Target Start/End: Original strand, 4131230 - 4131359
Alignment:
Q  189 tacaattcaaaaatttggtgatatgataaggatgtgtacatctgcaatggataatgattctttctcttcaatgt---ttggcaagttttaaaaacacaaa 285  Q
    ||||||| |||| |||||| |||||  ||||||    |||||||||||||||||||||||||| ||||||||||   || ||| ||||||||||  ||||    
T  4131230 tacaatttaaaactttggtaatatgccaaggatccacacatctgcaatggataatgattctttttcttcaatgtttattagcaggttttaaaaagtcaaa 4131329  T
Q  286 tttactgcagataacgatcaaagttaaaat 315  Q
    ||||||||||| || ||| |||||| ||||    
T  4131330 tttactgcagaaaatgatgaaagttcaaat 4131359  T

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Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 740 - 820
Target Start/End: Complemental strand, 4363518 - 4363438
Alignment:
Q  740 ttctttcctggcatttatttactcaatgcaatactcatgtctcctacattgtaggagctcatagtaaaaatgagaaaatgc 820  Q
    |||||||||| |||||||||||| ||||||||| |  ||||||||||||   ||||||||||||| |||||||| ||||||    
T  4363518 ttctttcctgacatttatttacttaatgcaatattgttgtctcctacatcaaaggagctcatagttaaaatgaggaaatgc 4363438  T

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Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 655 - 705
Target Start/End: Complemental strand, 4338035 - 4337985
Alignment:
Q  655 tggcacaccaatgaaaaatatgcatgctaaacaaaataattcttcattctt 705  Q
    ||||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  4338035 tggcacaccgataaaaaatatgcatgttaaacaaaataattcttcattctt 4337985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 858 - 919
Target Start/End: Complemental strand, 4337729 - 4337668
Alignment:
Q  858 tccaaattgaatgttaaaacatttttaaagcagtaattaaaaaattagataaccaaaaaata 919  Q
    ||||||||||||||| ||||| |||||||||| ||| |||| ||||||||||| ||| ||||    
T  4337729 tccaaattgaatgtttaaacagttttaaagcaataactaaacaattagataactaaacaata 4337668  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 654 - 706
Target Start/End: Original strand, 4118763 - 4118815
Alignment:
Q  654 ttggcacaccaatgaaaaatatgcatgctaaacaaaataattcttcattctta 706  Q
    |||||||| |||| |||||||||||||||||| ||||||| | ||||||||||    
T  4118763 ttggcacatcaataaaaaatatgcatgctaaataaaataacttttcattctta 4118815  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 658 - 698
Target Start/End: Complemental strand, 4363554 - 4363514
Alignment:
Q  658 cacaccaatgaaaaatatgcatgctaaacaaaataattctt 698  Q
    ||||||||||||||| ||||||||||||||||||| |||||    
T  4363554 cacaccaatgaaaaagatgcatgctaaacaaaatagttctt 4363514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 828 - 887
Target Start/End: Original strand, 4119009 - 4119071
Alignment:
Q  828 agaaatgcctttcttttatgagtactgg----tatccaaattgaatgttaaaacatttttaaag 887  Q
    |||||||||||||||||||||| |||||    ||||||||||||||| | ||||||||||||||    
T  4119009 agaaatgcctttcttttatgagcactggtatatatccaaattgaatg-tcaaacatttttaaag 4119071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 3e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 571 - 655
Target Start/End: Original strand, 28372514 - 28372598
Alignment:
Q  571 ataaccgtcgaggtgatgtcttgacctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgagaatatt 655  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28372514 ataaccgtcgaggtgacgtcttgacctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgaggatatt 28372598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 571 - 655
Target Start/End: Original strand, 28380336 - 28380420
Alignment:
Q  571 ataaccgtcgaggtgatgtcttgacctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgagaatatt 655  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28380336 ataaccgtcgaggtgacgtcttgacctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgaggatatt 28380420  T

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