View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12913_low_18 (Length: 442)

Name: NF12913_low_18
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12913_low_18
NF12913_low_18
[»] chr5 (3 HSPs)
chr5 (13-423)||(6862543-6862956)
chr5 (332-390)||(6892243-6892301)
chr5 (124-268)||(39815312-39815450)
[»] chr2 (8 HSPs)
chr2 (56-273)||(6565886-6566096)
chr2 (58-294)||(17367810-17368038)
chr2 (68-268)||(25856931-25857124)
chr2 (58-230)||(25473781-25473954)
chr2 (56-268)||(25863763-25863965)
chr2 (70-156)||(12406803-12406888)
chr2 (56-178)||(25716095-25716218)
chr2 (238-289)||(25716281-25716332)
[»] chr1 (3 HSPs)
chr1 (56-268)||(32638159-32638368)
chr1 (74-203)||(18424169-18424298)
chr1 (240-294)||(18424092-18424146)
[»] chr4 (1 HSPs)
chr4 (56-290)||(11569180-11569407)
[»] chr6 (2 HSPs)
chr6 (56-270)||(16691104-16691311)
chr6 (71-270)||(16663222-16663408)
[»] scaffold0070 (1 HSPs)
scaffold0070 (109-294)||(54330-54510)
[»] chr7 (2 HSPs)
chr7 (56-294)||(32184807-32185036)
chr7 (57-189)||(24040146-24040279)
[»] chr8 (3 HSPs)
chr8 (121-294)||(25406057-25406225)
chr8 (126-294)||(25377996-25378158)
chr8 (69-197)||(15962247-15962375)
[»] scaffold0078 (2 HSPs)
scaffold0078 (60-289)||(13790-14015)
scaffold0078 (115-193)||(6137-6215)
[»] chr3 (3 HSPs)
chr3 (59-179)||(32142436-32142556)
chr3 (237-284)||(32142317-32142364)
chr3 (245-289)||(7952491-7952535)


Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 13 - 423
Target Start/End: Complemental strand, 6862956 - 6862543
Alignment:
Q  13 aatatctatatagggtggggtgccatagcattgcatatattaagggtggtacgtagggttgcacgattataaatagaaatgttaggtcgcctttatcatc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6862956 aatatctatatagggtggggtgccatagcattgcatatattaagggtg-tacgtagggttgcacgattataaatagaaatgttaggtcgcctttgtcatc 6862858  T
Q  113 actc----tgactattctgctcattagtggtttgcctcattggaaaccctaagtctggagcatgtgaaaggaaaaggaagacttttgtctcaaatctcaa 208  Q
    ||||    |||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6862857 actcactctgactattatgctcattagtggtttgccccattggaaaccctaaatctggagcatgtgaaaggaaaaggaagacttttgtctcaaatctcaa 6862758  T
Q  209 cgagtccgggtaatcatggtttcattcatcaagtaagtgtgttctaatttcatataataacttgaccttgatgattaaattgtttatctttattatattt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6862757 cgagtccgggtaatcatggtttcattcatcaagtaagtgtgttctaatttcatataataacttgaccttgatgattaaattgtttatctttattatattt 6862658  T
Q  309 aattgttctcgtgagactcaaacatgtcaaataaaaattgcccacttgacataactccagtagtttgtgaaaggattcaagcnnnnnnngccagacattc 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  6862657 aattgttctcgtgagactcaaacatgtcaaataaaaattgcccacttgacataactccagtagtttgtgaaaggattcaagcaaaaaatgccagacattc 6862558  T
Q  409 aaaatatggccactg 423  Q
    |||||||||||||||    
T  6862557 aaaatatggccactg 6862543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 332 - 390
Target Start/End: Complemental strand, 6892301 - 6892243
Alignment:
Q  332 atgtcaaataaaaattgcccacttgacataactccagtagtttgtgaaaggattcaagc 390  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6892301 atgtcaaataaaaattgcccacttgacataactccagtagttagtgaaaggattcaagc 6892243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 124 - 268
Target Start/End: Complemental strand, 39815450 - 39815312
Alignment:
Q  124 tctgctcattagtggtttgcctcattggaaaccctaag-tctggagcatgtgaaaggaaaaggaagacttttgtctcaaatctcaacgagtccgggtaat 222  Q
    ||||||||||||||||||||| ||| | ||||| |||| || |||| |||||||||| ||||||||||| |||||  |||||||  ||| ||| | ||||    
T  39815450 tctgctcattagtggtttgccccatcgaaaaccgtaagttccggagtatgtgaaaggcaaaggaagactcttgtccgaaatctcggcgaatcc-gataat 39815352  T
Q  223 catggtttcattcatcaagtaagtgtgttctaatttcatataataa 268  Q
    ||||||||      ||||||||||| ||||||||||||||||||||    
T  39815351 catggttt------tcaagtaagtgcgttctaatttcatataataa 39815312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 56 - 273
Target Start/End: Original strand, 6565886 - 6566096
Alignment:
Q  56 gggtggtacgtagggttgcacgattataaatagaaatgttaggtcgcctttatcatcactctgactattctgctcattagtggtttgcctcattggaaac 155  Q
    ||||||||| |||||||||||||||||||||||| | | |||||| |||||  |||||| ||||||||||||||||||||||||||||| ||| | ||||    
T  6565886 gggtggtacctagggttgcacgattataaatagagaggctaggtcccctttgccatcaccctgactattctgctcattagtggtttgccccatcgaaaac 6565985  T
Q  156 cctaagtctggagcatgtgaaaggaaaaggaagacttttgtctcaaatctcaacgagtccgggtaatcatggtttcattcatcaagtaagtgtgttctaa 255  Q
    |||||||||||||||||||||||| ||| |||||||||| |||||||||||  ||||| | |||  ||||||||||      |||||||||||||| |||    
T  6565986 cctaagtctggagcatgtgaaaggcaaatgaagacttttttctcaaatctcggcgagttc-ggtggtcatggtttc------caagtaagtgtgttataa 6566078  T
Q  256 tttcatataataacttga 273  Q
    || |||||||||||||||    
T  6566079 ttccatataataacttga 6566096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 58 - 294
Target Start/End: Original strand, 17367810 - 17368038
Alignment:
Q  58 gtggtacgtagggttgcacgattataaatagaaatgttaggtcgcctttatcatcactctgactattctgctcattagtggtttgcctcattggaaaccc 157  Q
    ||||||| |||||||||||| ||||||||||| | | ||||||  ||||  ||||||||||||||| |||||||||||||||||||| ||||| ||||||    
T  17367810 gtggtacctagggttgcacggttataaatagagaggctaggtcctctttgccatcactctgactatcctgctcattagtggtttgccccattgaaaaccc 17367909  T
Q  158 taagtctggagcatgtgaaaggaaaaggaagacttttgtctcaaatctcaacgagtccgggtaatcatggtttcattcatcaagtaagtgtgttctaatt 257  Q
    ||||| ||||||||| |||||| || ||||||| |||||||||||||||  |||||||  || ||||||||||      | |||||||||||||||||||    
T  17367910 taagtttggagcatgcgaaaggcaagggaagac-tttgtctcaaatctcggcgagtcc-agtgatcatggttt------ttaagtaagtgtgttctaatt 17368001  T
Q  258 tcatataataacttgaccttgatgattaaattgttta 294  Q
    ||||||||||||||||  | | |||||||||||||||    
T  17368002 tcatataataacttgatttagttgattaaattgttta 17368038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 68 - 268
Target Start/End: Complemental strand, 25857124 - 25856931
Alignment:
Q  68 gggttgcacgattataaatagaaatgttaggtcgcctttatcatcactctgactattctgctcattagtggtttgcctcattggaaaccctaag-tctgg 166  Q
    |||||||||| ||||||||||| | | || ||| |||||  |||||||||| | ||||||||||||||||||||||| ||| | ||| |||||| || ||    
T  25857124 gggttgcacggttataaatagataggataagtcccctttgccatcactctggcaattctgctcattagtggtttgcc-catcgaaaatcctaagttccgg 25857026  T
Q  167 agcatgtgaaaggaaaaggaagacttttgtctcaaatctcaacgagtccgggtaatcatggtttcattcatcaagtaagtgtgttctaatttcatataat 266  Q
    ||||||||||||| ||||||||||| |||||| ||||||  |||| ||| | ||||||||||||      ||||||||||||||||||||||||||||||    
T  25857025 agcatgtgaaaggcaaaggaagactcttgtcttaaatcttgacgaatcc-gataatcatggttt------tcaagtaagtgtgttctaatttcatataat 25856933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 58 - 230
Target Start/End: Original strand, 25473781 - 25473954
Alignment:
Q  58 gtggtacgtagggttgcacgattataaatagaaatgttaggtcgcctttatcatcactctgactattctgctcattagtggtttgcctcattggaaaccc 157  Q
    ||||||| ||||||||||    |||||||||||| |||||||| |||||  ||||||||| ||||||||||||||||||||||||   | ||| ||||||    
T  25473781 gtggtacctagggttgcattgctataaatagaaaggttaggtccccttttccatcactctaactattctgctcattagtggtttgttcctttgaaaaccc 25473880  T
Q  158 taag-tctggagcatgtgaaaggaaaaggaagacttttgtctcaaatctcaacgagtccgggtaatcatggttt 230  Q
    |||| ||||||| |||||||||  ||||||| ||| ||||||| |||||||  |||| || |||||||||||||    
T  25473881 taagttctggagaatgtgaaagacaaaggaatactcttgtctcgaatctcagtgagttcgagtaatcatggttt 25473954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 56 - 268
Target Start/End: Complemental strand, 25863965 - 25863763
Alignment:
Q  56 gggtggtacgtagggttgcacgattataaatagaaatgttaggtcgcctttatcatcactctgactattctgctcattagtggtttgcctcattggaaac 155  Q
    ||||||||| ||| |||||||| ||||||||||| | | |||||| |||||  ||||||||| || ||| |||| |||||||||||||| ||| | ||||    
T  25863965 gggtggtacctagagttgcacggttataaatagagaggctaggtc-cctttgccatcactctaacaattatgcttattagtggtttgccccatcgaaaac 25863867  T
Q  156 cctaag-tctggagcatgtgaaaggaaaaggaagacttttgtctcaaatctcaacgagtccgggtaatcatggtttcattcatcaagtaagtgtgttcta 254  Q
    |||||| |||| ||||||||||||| |||||||||| ||||||||  |||||  ||| | | |||||||||| ||||      ||||||||||||||| |    
T  25863866 cctaagttctgaagcatgtgaaaggcaaaggaagac-tttgtctc--atctcggcgaattc-ggtaatcatgatttc------caagtaagtgtgttcaa 25863777  T
Q  255 atttcatataataa 268  Q
    ||||||||||||||    
T  25863776 atttcatataataa 25863763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 156
Target Start/End: Original strand, 12406803 - 12406888
Alignment:
Q  70 gttgcacgattataaatagaaatgttaggtcgcctttatcatcactctgactattctgctcattagtggtttgcctcattggaaacc 156  Q
    |||||||||||||||||||| | | |||||| |||||  ||||||| |||||||| ||||||||||||||||||||||||| |||||    
T  12406803 gttgcacgattataaatagagaggctaggtctcctttg-catcactatgactattttgctcattagtggtttgcctcattgaaaacc 12406888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 178
Target Start/End: Original strand, 25716095 - 25716218
Alignment:
Q  56 gggtggtacgtagggttgcacgattataaatagaaatgttaggtcgcctttatcatcactctgactattctgctcattagtggtttgcctcattggaaac 155  Q
    ||||||||| ||||||||||||| |||||||||| |   |||  | |||||  ||| ||||||   ||| ||||||||||||||||||| ||||| ||||    
T  25716095 gggtggtacctagggttgcacgaatataaatagagagactagaccccctttgccattactctgttaattatgctcattagtggtttgccccattgaaaac 25716194  T
Q  156 cctaag-tctggagcatgtgaaag 178  Q
    |||||| | ||||||| |||||||    
T  25716195 cctaagttttggagcacgtgaaag 25716218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 289
Target Start/End: Original strand, 25716281 - 25716332
Alignment:
Q  238 caagtaagtgtgttctaatttcatataataacttgaccttgatgattaaatt 289  Q
    |||| |||||||||||||||||||||||||| |||| |||||| ||| ||||    
T  25716281 caagaaagtgtgttctaatttcatataataaattgatcttgattatttaatt 25716332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 56 - 268
Target Start/End: Original strand, 32638159 - 32638368
Alignment:
Q  56 gggtggtacgtagggttgcacgattataaatagaaatgttaggtcgcctttatcatcactctgactattctgctcattagtggtttgcctcattggaaac 155  Q
    |||| |||| |||||||||| | ||||||||||| | | |||||| |||||  ||||||||||||||||  |||||||||||||||||| ||||| ||||    
T  32638159 gggtagtacctagggttgcatggttataaatagagaggctaggtcccctttgccatcactctgactatttcgctcattagtggtttgccccattgaaaac 32638258  T
Q  156 cctaagtctggagcatgtgaaaggaaaaggaagacttttgtctcaaatctcaacg-agtccgggtaatcatggtttcattcatcaagtaagtgtgttcta 254  Q
    ||||||  |||||||||||||||| |||||||||||  | |||||||||||  || ||||||| ||||||||||    ||||||||||||||||||||||    
T  32638259 cctaaggttggagcatgtgaaaggcaaaggaagactcctatctcaaatctcggcgaagtccggataatcatggt----ttcatcaagtaagtgtgttcta 32638354  T
Q  255 atttcatataataa 268  Q
    ||||||||||||||    
T  32638355 atttcatataataa 32638368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 74 - 203
Target Start/End: Complemental strand, 18424298 - 18424169
Alignment:
Q  74 cacgattataaatagaaatgttaggtcgcctttatcatcactctgactattctgctcattagtggtttgcctcattggaaaccc-taagtctggagcatg 172  Q
    |||| ||||||||||| | | |||||| |||||  | |||||||||| ||| |||||||||| |||||||| ||| | |||||| ||||| |||||||||    
T  18424298 cacggttataaatagagaggctaggtcccctttgccttcactctgacaattatgctcattagcggtttgccccatcgaaaacccttaagtttggagcatg 18424199  T
Q  173 tgaaaggaaaaggaagacttttgtctcaaat 203  Q
    ||||||| |||||||||| ||||||||||||    
T  18424198 tgaaaggcaaaggaagac-tttgtctcaaat 18424169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 18424146 - 18424092
Alignment:
Q  240 agtaagtgtgttctaatttcatataataacttgaccttgatgattaaattgttta 294  Q
    |||||| |||||||||||||||||||||||| || ||| || |||||||||||||    
T  18424146 agtaagcgtgttctaatttcatataataactcgatctttattattaaattgttta 18424092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 56 - 290
Target Start/End: Complemental strand, 11569407 - 11569180
Alignment:
Q  56 gggtggtacgtagggttgcacgattataaatagaaatgttaggtcgcctttatcatcactctgactattctgctcattagtggtttgcctcattggaaac 155  Q
    ||||||||| |||||||||||| ||||||||||| | |||  |||  ||||  |||||||||||| ||| ||||||||||||||||||| ||| | |||     
T  11569407 gggtggtacctagggttgcacggttataaatagagaggttgtgtcctctttgccatcactctgacgattatgctcattagtggtttgccccatcgaaaat 11569308  T
Q  156 cctaagtctggagcatgtgaaaggaaaaggaagacttttgtctcaaatctcaacgagtccgggtaatcatggtttcattcatcaagtaagtgtgttctaa 255  Q
    || ||||| ||||||||||||||| ||||||||||| ||||||||||||||  ||| ||| |||||||| |||||||      |||||||||||||||||    
T  11569307 cccaagtccggagcatgtgaaaggcaaaggaagactcttgtctcaaatctcggcgaatcc-ggtaatcaaggtttca------aagtaagtgtgttctaa 11569215  T
Q  256 tttcatataataacttgaccttgatgattaaattg 290  Q
    ||||||||||||||| || ||| ||||||||||||    
T  11569214 tttcatataataactcgatctttatgattaaattg 11569180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 56 - 270
Target Start/End: Original strand, 16691104 - 16691311
Alignment:
Q  56 gggtggtacgtagggttgcacgattataaatagaaatgttaggtcgcctttatcatcactctgactattctgctcattagtggtttgcctcattggaaac 155  Q
    ||||||||| |||||||||||| ||||||||||| | | |||||| |||||  |||||||| ||||||||||||||||||||||||  | | ||| |||     
T  16691104 gggtggtacctagggttgcacggttataaatagagaggctaggtcccctttgccatcactcagactattctgctcattagtggtttttcccgttgaaaat 16691203  T
Q  156 cctaagtctggagcatgtgaaaggaaaaggaagacttttgtctcaaatctcaacgagtccgggtaatcatggtttcattcatcaagtaagtgtgttctaa 255  Q
    |||||||||||||||||||||||| |||||||||||  | |||||||| |   ||| ||| ||||||||||||||       ||||||||||||||||||    
T  16691204 cctaagtctggagcatgtgaaaggtaaaggaagactcatttctcaaatattggcgaatcc-ggtaatcatggttt------acaagtaagtgtgttctaa 16691296  T
Q  256 tttcatataataact 270  Q
    |||||||||||||||    
T  16691297 tttcatataataact 16691311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 71 - 270
Target Start/End: Original strand, 16663222 - 16663408
Alignment:
Q  71 ttgcacgattataaatagaaatgttaggtcgcctttatcatcactctgactattctgctcattagtggtttgcctcattggaaaccctaagtctggagca 170  Q
    ||||||| |||||| |||| | |||||||| |||||  ||||||||| |||||||||||      ||||||||| ||||| |||||||||||| | ||||    
T  16663222 ttgcacggttataattagagaggttaggtcccctttgccatcactctcactattctgct------tggtttgccccattgaaaaccctaagtccgaagca 16663315  T
Q  171 tgtgaaaggaaaaggaagacttttgtctcaaatctcaacgagtccgggtaatcatggtttcattcatcaagtaagtgtgttctaatttcatataataact 270  Q
    ||||||||| ||||||||||| ||||||||||||||  ||| |||  |||||||||||||       |||||||||||||||||||||||||||||||||    
T  16663316 tgtgaaaggcaaaggaagactcttgtctcaaatctcggcgaatcc-agtaatcatggttt------acaagtaagtgtgttctaatttcatataataact 16663408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 109 - 294
Target Start/End: Complemental strand, 54510 - 54330
Alignment:
Q  109 catcactctgactattctgctcattagtggtttgcctcattggaaaccctaag-tctggagcatgtgaaaggaaaaggaag--acttttgtctcaaatct 205  Q
    ||||||||| |||||||||||||||| ||||||||| ||| | |||||||||| || ||||||||||||||||||||||||  ||| |||||||||||||    
T  54510 catcactctaactattctgctcattaatggtttgccccatcgaaaaccctaagttccggagcatgtgaaaggaaaaggaagacactcttgtctcaaatct 54411  T
Q  206 caacgagtccgggtaatcatggtttcattcatcaagtaagtgtgttctaatttcatataataacttgaccttgatgattaaattgttta 294  Q
    |  ||| ||   || ||||||||||      |||||||||||||||||||||||||||||||||| || |||||||| |||||||||||    
T  54410 cggcgaatc--tgtgatcatggttt------tcaagtaagtgtgttctaatttcatataataactcgatcttgatgaataaattgttta 54330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 56 - 294
Target Start/End: Complemental strand, 32185036 - 32184807
Alignment:
Q  56 gggtggtacgtagggttgcacgattataaatagaaatgttaggtcgcctttatcatcactctgactattctgctcattagtggtttgcctcattggaaac 155  Q
    ||||||||| |||||||||||||||||||||||| | | |||||| |||||  | |||||||||||| ||||||||||||||||||||| ||| | ||||    
T  32185036 gggtggtacctagggttgcacgattataaatagagaggctaggtc-cctttgccgtcactctgactactctgctcattagtggtttgccccatcgaaaac 32184938  T
Q  156 cctaagtctggagcatgtgaaaggaaaaggaagacttttgtctcaaatctcaacgagtccgggtaatcatggtttcattcatcaagtaagtgtgttctaa 255  Q
    |||||||  ||||||||||||||| |||||||||| |||||| ||||||||  ||| |   | ||| |||||||||      |||| |||||||  ||||    
T  32184937 cctaagttcggagcatgtgaaaggcaaaggaagac-tttgtcccaaatctcggcgaat-ttgataaacatggtttc------caagcaagtgtgcactaa 32184846  T
Q  256 tttcatataataacttgaccttgatgattaaattgttta 294  Q
    ||||||||||||| |  | ||||||||||||||||||||    
T  32184845 tttcatataataattgaatcttgatgattaaattgttta 32184807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 189
Target Start/End: Complemental strand, 24040279 - 24040146
Alignment:
Q  57 ggtggtacgtagggttgcacgattataaatagaaatgttaggtcgcctttatcatcactctgactattctgctcattagtggtttgcctcattggaaacc 156  Q
    |||||||| |||| |||||   ||||||||||||||| ||| || | ||| |||||||| |||  ||||| |||||||||||||||||||||   ||| |    
T  24040279 ggtggtacctaggattgcatagttataaatagaaatgctagatcccatttgtcatcactatgataattctactcattagtggtttgcctcatcaaaaatc 24040180  T
Q  157 ctaag-tctggagcatgtgaaaggaaaaggaaga 189  Q
    |||||   |||||||||||||||| |||||||||    
T  24040179 ctaagaaatggagcatgtgaaaggcaaaggaaga 24040146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 121 - 294
Target Start/End: Original strand, 25406057 - 25406225
Alignment:
Q  121 tattctgctcattagtggtttgcctcattggaaaccctaag-tctggagcatgtgaaaggaaaaggaag--acttttgtctcaaatctcaacgagtccgg 217  Q
    |||||||||||||| ||||||||| ||| | |||||||||| || ||||||||||||||||||||||||  ||| ||||||||||||||  ||| ||       
T  25406057 tattctgctcattaatggtttgccccatcgaaaaccctaagttccggagcatgtgaaaggaaaaggaagacactcttgtctcaaatctcggcgaatc--t 25406154  T
Q  218 gtaatcatggtttcattcatcaagtaagtgtgttctaatttcatataataacttgaccttgatgattaaattgttta 294  Q
    || ||||||||||      |||||||||||||||||||||||||||||||||| || |||||||| |||||||||||    
T  25406155 gtgatcatggttt------tcaagtaagtgtgttctaatttcatataataactcgatcttgatgaataaattgttta 25406225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 126 - 294
Target Start/End: Original strand, 25377996 - 25378158
Alignment:
Q  126 tgctcattagtggtttgcctcattggaaaccctaagt-ctggagcatgtgaaaggaaaaggaagacttttgtctcaaatctcaacgagtccgggtaatca 224  Q
    ||||||||| ||||||||| ||| | ||||||||||| |  |||||||||||| | ||||||||||| |||| |||||||||  ||| ||  | | ||||    
T  25377996 tgctcattaatggtttgccccatcgaaaaccctaagttccagagcatgtgaaaagcaaaggaagactcttgtttcaaatctcggcgaatctag-tgatca 25378094  T
Q  225 tggtttcattcatcaagtaagtgtgttctaatttcatataataacttgaccttgatgattaaattgttta 294  Q
    ||||||      ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  25378095 tggttt------tcaagtaagtgtgttctaatttcatataataacttgatcttgatgaataaattgttta 25378158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 69 - 197
Target Start/End: Complemental strand, 15962375 - 15962247
Alignment:
Q  69 ggttgcacgattataaatagaaatgttaggtcgcctttatcatcactctgactattctgctcattagtggtttgcctcattggaaaccctaagtctggag 168  Q
    ||||||| ||||||||||||| | |||||||| || ||  || ||||||||||||||| ||||||||| |||  || ||||| ||||| ||||| |||||    
T  15962375 ggttgcatgattataaatagagaggttaggtccccattgccaccactctgactattctcctcattagtagttcaccccattgaaaaccttaagtttggag 15962276  T
Q  169 catgtgaaaggaaaaggaagacttttgtc 197  Q
    ||||||||||||||||| ||||| |||||    
T  15962275 catgtgaaaggaaaagggagactcttgtc 15962247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 60 - 289
Target Start/End: Original strand, 13790 - 14015
Alignment:
Q  60 ggtacgtagggttgcacgattataaatagaaatgttaggtcgcctttatcatcactctgactattctgctcattagtggtttgcctcattggaaaccc-- 157  Q
    ||||| |||||||||||| ||||||||||| | | |||||| |||||  |||||||||||||||| ||||||||||||||||||| ||||| || |||      
T  13790 ggtacctagggttgcacggttataaatagagaggctaggtcccctttgccatcactctgactattatgctcattagtggtttgccccattgaaatcccta 13889  T
Q  158 --taagtctggagcatgtgaaaggaaaaggaagacttttgtctcaaatctcaacgagtccgggtaatcatggtttcattcatcaagtaagtgtgttctaa 255  Q
      ||||| ||||| |||||||||| |||| ||||| |||||||  |||| |  ||| ||| ||| | |||| ||||      ||||||||||||||||||    
T  13890 attaagtttggagtatgtgaaaggcaaagaaagac-tttgtcttcaatcccggcgaatcc-ggtcaccatgatttc------caagtaagtgtgttctaa 13981  T
Q  256 tttcatataataacttgaccttgatgattaaatt 289  Q
    ||||||||||||||| || |||||||||| ||||    
T  13982 tttcatataataactcgatcttgatgatttaatt 14015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 115 - 193
Target Start/End: Original strand, 6137 - 6215
Alignment:
Q  115 tctgactattctgctcattagtggtttgcctcattggaaaccctaagtctggagcatgtgaaaggaaaaggaagacttt 193  Q
    ||||||||||||||||||||||| |||||| | ||| ||||||||| | ||||| |||||||||  |||||||||||||    
T  6137 tctgactattctgctcattagtgttttgccccgttgaaaaccctaaatttggagtatgtgaaagacaaaggaagacttt 6215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 59 - 179
Target Start/End: Complemental strand, 32142556 - 32142436
Alignment:
Q  59 tggtacgtagggttgcacgattataaatagaaatgttaggtcgcctttatcatcactctgactattctgctcattagtggtttgcctcattggaaaccct 158  Q
    |||||| || |||| |||| ||||||||||| | |||||||| ||| |   |||||||||||||||||||||||||||||||| || ||||| |||||||    
T  32142556 tggtacctaaggttacacggttataaatagagaggttaggtctcctctgctatcactctgactattctgctcattagtggtttaccccattgaaaaccct 32142457  T
Q  159 aagtctggagcatgtgaaagg 179  Q
    ||||  | |||||||||||||    
T  32142456 aagttcgaagcatgtgaaagg 32142436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 32142364 - 32142317
Alignment:
Q  237 tcaagtaagtgtgttctaatttcatataataacttgaccttgatgatt 284  Q
    ||||||||||||||||||||||||||||||||| ||| |||| |||||    
T  32142364 tcaagtaagtgtgttctaatttcatataataacatgatcttggtgatt 32142317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 7952535 - 7952491
Alignment:
Q  245 gtgtgttctaatttcatataataacttgaccttgatgattaaatt 289  Q
    ||||||| |||||||||||||||||| || |||||||||| ||||    
T  7952535 gtgtgttttaatttcatataataactcgatcttgatgatttaatt 7952491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University