View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12913_low_2 (Length: 720)

Name: NF12913_low_2
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12913_low_2
NF12913_low_2
[»] chr2 (1 HSPs)
chr2 (17-718)||(710554-711268)


Alignment Details
Target: chr2 (Bit Score: 594; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 17 - 718
Target Start/End: Complemental strand, 711268 - 710554
Alignment:
Q  17 agttacaacttcattcgttagcaaaagtagtgtttactaaacatagtaa---aaagtacacgtaataatatgaaaaacaaaaacacaatcaatcaaacgt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  711268 agttacaacttcattcgttagcaaaagtagtgtttactaaacatagtaataaaaagtacacgtaataatatgaaaaacaaaaacacaatcaatcaaacgt 711169  T
Q  114 acctgaatttgtttgttttccatcatcctcttttctttctctggatattgttatcttccttcatcgttatttctcttcccttaatattcattcattcatt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  711168 acctgaatttgtttgttttccatcatcctcttttctttctctggatattgttaccttccttcatcgttatttctcttcccttaatattcattcattcatt 711069  T
Q  214 cat----attggcacctcctctttctccaatgcatgcaatgggagataatccacgctccccgccaacattggatttgcacaatctctttaagatgcctaa 309  Q
    |||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  711068 cattcatattggcacctcctctttctccaatgcatgcaatgggagataatccacgctccccgccaacattggatttgcacaatctctttaagatgcctaa 710969  T
Q  310 aactaaatcattgaaagatgttagcaaggtttgcaaaacgtttgtacacaaacgacaccatgacaagaaacacaatgaggtaatcttaatcaatatttac 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  710968 aactaaatcattgaaagatgttagcaaggtttgcaaaacgtttgtacacaaacgacaccatgacaagaaacacaatgaggtaatcttaatcaatatttac 710869  T
Q  410 atgcatgttggtagaacacacatttaattaatctcctttgaaaaatgttacctatcattcaatctaaacaag---nnnnnnnnnnnnnntcattacattt 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||    
T  710868 atgcatgttggtagaacacacatttaattaatctcctttgaaaaatgttacctatcattcaatctaaacaagaaaaaaaaataaaaaaatcattacattt 710769  T
Q  507 catataattaataaacttatcacaatacttttactagaaaaagttgaatctccaaaccaaaataaaataaaatatgtgtatagtttcatctgtgagtatt 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  710768 catataattaataaacttatcacaatacttttactagaaaaagttgaatctccaaaccaaaataaaataaaatatgtgtatagtttcatctgggagtatt 710669  T
Q  607 atagaaacatcaaaacgagagtcatgcaaatgcaaatggtataagtttgcagaaac---atttgatgtgctgggatgtggatttgtagcgtgatacccct 703  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||    
T  710668 atagaaacatcaaaacgagagtcatgcaagtgcaaatggtataagtttgcagagacattatttgatgtgctgggatgtggatttgtagcgtgatacccct 710569  T
Q  704 cttcttctcactcga 718  Q
    ||||||| |||||||    
T  710568 cttcttcacactcga 710554  T

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