View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12913_low_20 (Length: 420)

Name: NF12913_low_20
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12913_low_20
NF12913_low_20
[»] chr6 (3 HSPs)
chr6 (1-403)||(34873608-34874012)
chr6 (71-403)||(34871678-34872016)
chr6 (109-320)||(9911036-9911247)


Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 34874012 - 34873608
Alignment:
Q  1 tactaacaccaaagaaacctttcaccaacctgtccttaaaagaggtcgccactacttcaacacaaaacctaaaaccataaactaacaatttcaacnnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  34874012 tactaacaccaaagaaacctttcaccaacctgtccttaaaagaggtcgccactacttcaacacaaaacctaaaaccataaactaacaatttcaacaaaaa 34873913  T
Q  101 nncatcatcattcaacaatgtacacgaacaagcttcaagaactatgtcnnnnnnnctcatatcctcttctaaaataccaaacaacccatgaaggaccact 200  Q
      ||||||||||||||||||||||||||||||||||||||||||||||       |||||| |||||||   ||||||||||||||||||||||||||||    
T  34873912 aacatcatcattcaacaatgtacacgaacaagcttcaagaactatgtcaaaaaaactcataccctcttcccgaataccaaacaacccatgaaggaccact 34873813  T
Q  201 gcacaatcctcttttctcatcaactgttaccgttaagtccatttccttcacttcaccagaactagcaagcacccttaaggcatctcaagaatttgttgcg 300  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||    
T  34873812 gcacaatcctcttttctcatcaaccgttaccgttaagtccatttccttcacttcaccagaacctgcaagcacccttaaggcatctcaagagtttgttgcg 34873713  T
Q  301 atggttgcttttcatcatttcctgcaaaatgaaaacaacagttaagtgttgcaatctatgatgtttctttcctcaactgatttataaatg--tttttcat 398  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||  ||||||||    
T  34873712 atggttgcttttcatcatttcctgcaaaatgaaaacaccagttaagtcttgcaatctatgatgtttctttcctcaactgatatataaatgcatttttcat 34873613  T
Q  399 tgtct 403  Q
    |||||    
T  34873612 tgtct 34873608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 71 - 403
Target Start/End: Original strand, 34871678 - 34872016
Alignment:
Q  71 aaaaccataaactaacaatttcaacnnnnnnn--catcatcattcaacaatgtacacgaacaa--gcttcaagaactatgtcnnnnnnnctcatatcctc 166  Q
    |||||||||||||||||||||||||         |||||||||||||||||||||| ||||||  |||||||||||||||||       ||| || || |    
T  34871678 aaaaccataaactaacaatttcaacaaaaaaaaacatcatcattcaacaatgtacaagaacaaaagcttcaagaactatgtcaaaaaaactcttacccac 34871777  T
Q  167 ttctaaaataccaaacaacccatgaaggaccactgcacaatcctcttttctcatcaactgttaccgttaagtccatttccttcacttcaccagaactagc 266  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||| ||| |||    
T  34871778 ttcccaaataccaaacaacccatgaaggaccactgcacaatcctcttttttcatcaaccgttaccgttaagtctatttccttcacttcaccaaaaccagc 34871877  T
Q  267 aagcacccttaaggcatctcaagaatttgttgcgatggttgcttttcatcatttcctgcaaaatgaaaacaacagttaagtgttgcaatctatgatgttt 366  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  34871878 aagcacccttaaggcatctcaagagtttgctgcgatggttgcttttcatcatttcctgcaaaatgaaaacaacagttaagtcttgcaatccatgatgttt 34871977  T
Q  367 ctttcctcaactgatttataaatg--tttttcattgtct 403  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  34871978 ctttcctcaactgatttataaatgcatttttcattgtct 34872016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 109 - 320
Target Start/End: Original strand, 9911036 - 9911247
Alignment:
Q  109 cattcaacaatgtacacgaacaagcttcaagaactatgtcnnnnnnnctcatatcctcttctaaaataccaaacaacccatgaaggaccactgcacaatc 208  Q
    |||||||||||||||| || ||||||||||||||||||||        ||||| |||||||   ||||||||||||||| |||||||||||  ||||||     
T  9911036 cattcaacaatgtacaagaccaagcttcaagaactatgtcaaaaaaattcataccctcttcccgaataccaaacaacccgtgaaggaccaccacacaatt 9911135  T
Q  209 ctcttttctcatcaactgttaccgttaagtccatttccttcacttcaccagaactagcaagcacccttaaggcatctcaagaatttgttgcgatggttgc 308  Q
    ||| ||||||| |||| ||||| ||||| |||||||||||| |||| || |||| |||| ||||| |||||   |||||||| | || ||| ||||||||    
T  9911136 ctcgtttctcaacaaccgttactgttaactccatttccttctcttctcctgaaccagcacgcaccattaagctgtctcaagattctgctgccatggttgc 9911235  T
Q  309 ttttcatcattt 320  Q
    ||||||||||||    
T  9911236 ttttcatcattt 9911247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University