View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12913_low_23 (Length: 399)
Name: NF12913_low_23
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12913_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 2 - 381
Target Start/End: Complemental strand, 42594754 - 42594369
Alignment:
| Q |
2 |
tcattcacatagatctctcct---actcagataaatatcaaattataagtagaactggtaattcatattctctatacaaa----gtctaagttccatcta |
94 |
Q |
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| T |
42594754 |
tcattcacatagatctctcctcagactcagataaatatcaaattataagttgaactggtaattcatattctctatacaaattaagtctaagttccatcta |
42594655 |
T |
|
| Q |
95 |
aacaggtatattctttttaaaaagtattttaatgtacgccttaaaacagaggtatctaaatgcttccataaaaagaatgaacaatgactagcatagtata |
194 |
Q |
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| T |
42594654 |
aacaggtatattctttttaaaaagtattttaatgtacgccttaaaacagaagtatctaaatgcttccataaaaagaatgaacaatgactagcatagtata |
42594555 |
T |
|
| Q |
195 |
aaaaaccaattgaaggaactaaactcaccacaacgttttttggcagaatattctccttttcattattgaaattttccaaagtaattttgcggatttcact |
294 |
Q |
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|| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42594554 |
aacaaccaattcaaggaactaaactcaccacaacgtttttaggcagaatattctccttttcattattgaagttttccaaagtaattttgcggatttcact |
42594455 |
T |
|
| Q |
295 |
acagatactgatttcagccagttcatggacagcactaaggggacttttctgagctacataagaagcaagcttaggatccacaatctg |
381 |
Q |
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| T |
42594454 |
acagatactgatttcagccagttcatggacagcactaaggggac-tttctgagctacataagaagcaagcttaggatccacaatctg |
42594369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 177 - 381
Target Start/End: Complemental strand, 42577883 - 42577679
Alignment:
| Q |
177 |
aatgactagcatagtataaaaaaccaattgaaggaactaaactcaccacaacgttttttggcagaatattctccttttcattattgaaattttccaaagt |
276 |
Q |
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||||| ||||||| ||||| ||||| || || ||||||||||||||| || ||||| ||||| ||| | |||||| || ||||||| || ||||| |
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| T |
42577883 |
aatgagtagcataacataaacaaccagttaaatgaactaaactcaccataatctttttaggcagtgtatcgttcttttccttgttgaaatcatctaaagt |
42577784 |
T |
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| Q |
277 |
aattttgcggatttcactacagatactgatttcagccagttcatggacagcactaaggggacttttctgagctacataagaagcaagcttaggatccaca |
376 |
Q |
| |
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|||||| ||||||||| || ||| || || |||||| ||||||| |||| ||||||| | | || || | |||| ||||||||||||||||||||| |
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| T |
42577783 |
aattttacggatttcaacacggattgtggcttgagccagctcatggatagcataaaggggattatcctcagttccataggaagcaagcttaggatccaca |
42577684 |
T |
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| Q |
377 |
atctg |
381 |
Q |
| |
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||||| |
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| T |
42577683 |
atctg |
42577679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 381
Target Start/End: Complemental strand, 42572892 - 42572862
Alignment:
| Q |
351 |
cataagaagcaagcttaggatccacaatctg |
381 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
42572892 |
cataagaagcaagcttaggatccacaatctg |
42572862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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