View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12913_low_24 (Length: 397)
Name: NF12913_low_24
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12913_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 23 - 319
Target Start/End: Complemental strand, 34260118 - 34259822
Alignment:
| Q |
23 |
cacagaagaggaaatcaggctatatcaaatattgtattttttgcgtacgaagttctgttaaagaacatacaaggatatcaagaggatttccatgacttgc |
122 |
Q |
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| T |
34260118 |
cacagaaggggaaatcaggctatatcaaatattgtattttttgcgtacgaagttctgtttaagaacatacaaggatatcaagaggatttccatgacttgc |
34260019 |
T |
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| Q |
123 |
aggatcttccttcataccttcaagtattttagcatacctttttgaaagaaatgaaccaaaataagattcaatattacaattaacaacaatttgaattgct |
222 |
Q |
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| T |
34260018 |
aggatcttccttcatatcttcaagtattttagcatacctttttgaaagaaatgaaccaaaataagattcaatattacaattaacaacaatttgaattgct |
34259919 |
T |
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| Q |
223 |
taggataaaaacagacattacaacctttgagcataaatttcggctttatttgcagcatcaggaacagaagtatcactcgcagcacgcttcctgtacc |
319 |
Q |
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| T |
34259918 |
taggataaaaacagacattacaacctttgagcataaatttcggctttatttgcagcatcaggaacagaagtatcactcgcagcacgcttcctgtacc |
34259822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 72 - 236
Target Start/End: Complemental strand, 34250104 - 34249941
Alignment:
| Q |
72 |
aagttctgttaaagaacatacaaggatatcaagaggatttccatgacttgcaggatcttccttcataccttcaagtattttagcatacctttttgaaaga |
171 |
Q |
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| T |
34250104 |
aagttctgataaagaacatacaaggatatcaagaggatcgccatgacttgcaggatctttctccaaatcttcaagtattttagcatacctttttgaaaga |
34250005 |
T |
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| Q |
172 |
aatgaaccaaaataagattcaatattacaattaacaacaatttgaattgcttaggataaaaacag |
236 |
Q |
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| T |
34250004 |
aatgca-caaaagaaaatgcaatattgcaattaacaacaatttgaattacctaggataaagacag |
34249941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 244 - 319
Target Start/End: Complemental strand, 34249846 - 34249771
Alignment:
| Q |
244 |
aacctttgagcataaatttcggctttatttgcagcatcaggaacagaagtatcactcgcagcacgcttcctgtacc |
319 |
Q |
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| T |
34249846 |
aacctttgagcaaaaatttcagctttatttgctgcatcaggaacagaagtatcactctcagcacgtttcctgtacc |
34249771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 315
Target Start/End: Original strand, 20869633 - 20869703
Alignment:
| Q |
245 |
acctttgagcataaatttcggctttatttgcagcatcaggaacagaagtatcactcgcagcacgcttcctg |
315 |
Q |
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| T |
20869633 |
acctttgagcaaatttttcagctttttctgcagcattgggaacagaagtatcactctctgcacgcttcctg |
20869703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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