View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12913_low_25 (Length: 396)
Name: NF12913_low_25
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12913_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 52 - 389
Target Start/End: Original strand, 41864104 - 41864438
Alignment:
| Q |
52 |
cagtgacagtagcagtgatgagagtgacagcgacaatgaaaattgttgcaacaggaaggcaagtatatata--gactcttagcgacaaaaaattactata |
149 |
Q |
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| T |
41864104 |
cagtggcagtagcagtgatgagagtgacagcgacaatgaaaattgtcgcaacaggaaggcaagtatatatatagactgttggcgacaaaaaattactata |
41864203 |
T |
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| Q |
150 |
ggccaaataatcnnnnnnnnnnnnnatgttaagttttattattgatgcacaaatttgaagttcaagtttattttctcatgtattgtgctcaatttgattc |
249 |
Q |
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| T |
41864204 |
ggccaaataat-----attttttttatgttaagttttattattgatgcacaaatttgaagttcaagtttattttctcatgtattgtgctcaatttgattc |
41864298 |
T |
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| Q |
250 |
ctaacactttgttttatgtgtgtatgatgcagtactacaattaaggagcaattttactgcataataaataaattggagtttgaagatcggagtttgcaac |
349 |
Q |
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|||||||||||||||||||||||||| ||| |||| |||||||||||| ||| |||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41864299 |
ctaacactttgttttatgtgtgtatgcagcactactgcaattaaggagccattgtactacataataaataaattggagattgaagatcggagtttgcaac |
41864398 |
T |
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| Q |
350 |
tcaaagtccaatataatgtatgtggtgattgttggcctgt |
389 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||| |
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| T |
41864399 |
tcaaagtccaatataatgtatgtgatgattattggcctgt |
41864438 |
T |
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