View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12913_low_27 (Length: 387)

Name: NF12913_low_27
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12913_low_27
NF12913_low_27
[»] chr4 (3 HSPs)
chr4 (20-378)||(165769-166127)
chr4 (143-271)||(105235-105363)
chr4 (20-134)||(105466-105579)
[»] chr8 (4 HSPs)
chr8 (155-265)||(5720992-5721102)
chr8 (155-265)||(5688260-5688370)
chr8 (158-271)||(5653926-5654039)
chr8 (157-265)||(5668475-5668582)
[»] chr3 (1 HSPs)
chr3 (157-271)||(12136454-12136568)
[»] chr7 (1 HSPs)
chr7 (159-271)||(13053749-13053861)
[»] scaffold0013 (3 HSPs)
scaffold0013 (148-271)||(91396-91519)
scaffold0013 (20-58)||(91231-91269)
scaffold0013 (314-378)||(91575-91639)


Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 20 - 378
Target Start/End: Complemental strand, 166127 - 165769
Alignment:
Q  20 ctcctgctggctcccaagctgccaatccaccatttttactctacactaattaaaaaataaagttgtgtcaaaattaaaccaggtagcacaaataaatcaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  166127 ctcctgctggctcccaagctgccaatccaccatttttactctacactaattaaaaaataaagttgtgtcaaaattaaaccaagtagcacaaataaatcaa 166028  T
Q  120 acatcaatgatcaaaagttgtgacaattaattgaatagtacttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  166027 acatcaatgatcaaaagttgtgacaattaattgaatagtacttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttt 165928  T
Q  220 tcccccacaatctctggaggcaacattgataaatgtagacaacactggaacaacccataattttaccttaattaacttataattcggcttgattgtgaaa 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  165927 tcccccacaatctctggaggcaacattgataaatgtagacaacactggaacaacccataattttaccttaattaacttataattcggcttgattgtgaaa 165828  T
Q  320 gcttagtatcaaattacattgtttatagcctatgttgttaattaccttcaatccttctg 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  165827 gcttagtatcaaattacattgtttatagcctatgttgttaattaccttcaatccttctg 165769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 143 - 271
Target Start/End: Complemental strand, 105363 - 105235
Alignment:
Q  143 caattaattgaatagtacttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaa 242  Q
    |||| |||| ||||| ||||||||||||||||| || || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  105363 caataaatttaatagcacttgcctgaagcgacaacaagacattgaccgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaa 105264  T
Q  243 cattgataaatgtagacaacactggaaca 271  Q
    |||||||||| ||||||||||||| ||||    
T  105263 cattgataaaagtagacaacactgaaaca 105235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 105579 - 105466
Alignment:
Q  20 ctcctgctggctcccaagctgccaatccaccatttttactctacactaattaaaaaataaagttgtgtcaaaattaaaccaggtagcacaaataaatcaa 119  Q
    ||||||| |||||||| |||||||| ||||| |||||||||| || | |||||||| | | ||||||| |||| || | ||||||||| |||||||||||    
T  105579 ctcctgcgggctcccatgctgccaaaccaccctttttactctgcaatcattaaaaattta-gttgtgttaaaagtagatcaggtagcataaataaatcaa 105481  T
Q  120 acatcaatgatcaaa 134  Q
    |||| | ||||||||    
T  105480 acataagtgatcaaa 105466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 8e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 155 - 265
Target Start/End: Original strand, 5720992 - 5721102
Alignment:
Q  155 tagtacttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaacattgataaatg 254  Q
    |||||||||||||||| || | || ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |    
T  5720992 tagtacttgcctgaagagaaaacaagatattgactgaatcatataacctttcaggttccattttttcccccacaatctctggaggcaacattgataaaag 5721091  T
Q  255 tagacaacact 265  Q
     ||||||||||    
T  5721092 cagacaacact 5721102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 155 - 265
Target Start/End: Original strand, 5688260 - 5688370
Alignment:
Q  155 tagtacttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaacattgataaatg 254  Q
    |||||||||||||||| || | || ||||||||| ||||||||||||||||| |||||||| |||||||| |||||||| |||| ||||||||||||| |    
T  5688260 tagtacttgcctgaagagaaaacatgatattgacggaatcatataacctttcaggttccattttttcccctacaatctccggagacaacattgataaaag 5688359  T
Q  255 tagacaacact 265  Q
     ||||||||||    
T  5688360 cagacaacact 5688370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 158 - 271
Target Start/End: Original strand, 5653926 - 5654039
Alignment:
Q  158 tacttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaacattgataaatgtag 257  Q
    ||||| ||||||| |||| ||  | ||||||||||||||||| |||||| ||||| | | ||||||||||||||| ||||||||||||||| ||| ||||    
T  5653926 tactttcctgaagtgacaacacaaaattgactgaatcatatagcctttcgggttcaaccatttcccccacaatctttggaggcaacattgacaaaagtag 5654025  T
Q  258 acaacactggaaca 271  Q
    ||||||||| ||||    
T  5654026 acaacactgaaaca 5654039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 157 - 265
Target Start/End: Original strand, 5668475 - 5668582
Alignment:
Q  157 gtacttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaacattgataaatgta 256  Q
    |||||||||||||| || |  ||||||||||| | ||||||||||||||| ||||||||||||| |||||||||||| ||||||| ||| |||||| | |    
T  5668475 gtacttgcctgaagagaaaataggatattgaccgcatcatataacctttcaggttccatctttt-ccccacaatctccggaggcagcatcgataaaagca 5668573  T
Q  257 gacaacact 265  Q
    |||||||||    
T  5668574 gacaacact 5668582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 12136454 - 12136568
Alignment:
Q  157 gtacttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaacattgataaatgta 256  Q
    |||||||||||||| ||||  |||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||| |||    
T  12136454 gtacttgcctgaagagacaataggatattaactgaatcatataacctttctggttccatcttttcccctacaatctttggaggcaacactgataaaagta 12136553  T
Q  257 gacaacactggaaca 271  Q
    | |||||||| ||||    
T  12136554 ggcaacactgaaaca 12136568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 159 - 271
Target Start/End: Complemental strand, 13053861 - 13053749
Alignment:
Q  159 acttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaacattgataaatgtaga 258  Q
    |||| ||||||| |||| ||| | ||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||| |||||    
T  13053861 acttacctgaagtgacaacagaagattgactgaatcatataacctctctggttccatattttcacccacaatctcaggaggcaacattgataaaagtaga 13053762  T
Q  259 caacactggaaca 271  Q
    |||||||| ||||    
T  13053761 caacactgaaaca 13053749  T

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Target: scaffold0013 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 148 - 271
Target Start/End: Original strand, 91396 - 91519
Alignment:
Q  148 aattgaatagtacttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaacattg 247  Q
    ||||||| ||||| ||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||| |  ||||||| |||||||    
T  91396 aattgaacagtacatgcctgaagtgacaacaggagattgactgaatcatataacctttccggttccatcttttcccccacagttgctggaggaaacattg 91495  T
Q  248 ataaatgtagacaacactggaaca 271  Q
    ||||  ||| ||||||||| ||||    
T  91496 ataatagtaaacaacactgaaaca 91519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 91231 - 91269
Alignment:
Q  20 ctcctgctggctcccaagctgccaatccaccatttttac 58  Q
    |||||||||||||||||||||||||||||||||||||||    
T  91231 ctcctgctggctcccaagctgccaatccaccatttttac 91269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 378
Target Start/End: Original strand, 91575 - 91639
Alignment:
Q  314 gtgaaagcttagtatcaaattacattgtttatagcctatgttgttaattaccttcaatccttctg 378  Q
    ||||||||||| ||||||||||   | || |||||||||||||||| |||||||||| |||||||    
T  91575 gtgaaagcttattatcaaattatgctattcatagcctatgttgttagttaccttcaaaccttctg 91639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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