View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12913_low_29 (Length: 380)
Name: NF12913_low_29
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12913_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 14380119 - 14379777
Alignment:
| Q |
18 |
agttatttatctctgattgcagtggttttttgcagcatcgtttactcactacctcttgctagagcttaattgtgactggtgattcaattgtcaatgctat |
117 |
Q |
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| T |
14380119 |
agttatttatctctgattgcagtggttttttgcagcatcgtttactcactacctcttgctagagcttaattgtgactggtgattcaattgtcaatgctat |
14380020 |
T |
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| Q |
118 |
ttgtgggaatcatgaacctctaatgggttgggttttcttactcaccttgactacaacaattatgaggtttgcgccatttatgtttgtgcattagtgtcgt |
217 |
Q |
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| T |
14380019 |
ttgtgggaatcatgaacctctaatgggttgagttttcttactcaccttgactacaacaattatgaggtttgcgccatttatgtttgtgcattagtgtcgt |
14379920 |
T |
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| Q |
218 |
acttgttgcatattgcccctggcaaagagcaagtaatgtcatgtttggttatgtaggttgattttatttctcgcatccgaagtttgttgagttgtaaatt |
317 |
Q |
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| T |
14379919 |
acttgttgcatattgcccctggcaaagagcaagtaatgtcatgtttggttatataggttgattttatttctcgcatccgaagtttgttgagttgtaaatt |
14379820 |
T |
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| Q |
318 |
taccaaaactctaattagtagaagttcgtcaaatagttgctgc |
360 |
Q |
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| T |
14379819 |
gaccaaaactctaattagtagaagttggtcaaatagttgctgc |
14379777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 59 - 357
Target Start/End: Original strand, 14246164 - 14246463
Alignment:
| Q |
59 |
ttactcactacctcttgctagagcttaattgtgactggtgattcaattgtcaatgctatttgtgggaatcatgaacctctaatgggttgggttttcttac |
158 |
Q |
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| T |
14246164 |
ttactcattacctctcgccagagctcaattgtgactggtgattcaattgtcaatgctatttgtgggaatcatgaacccgtaatgggttgagttttcttac |
14246263 |
T |
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| Q |
159 |
tcaccttgactacaacaattatgaggtttgcgccatttatgtttgtgcattagtgtcgtacttgttgcatattgcccctggcaaagagcaagtaatgtca |
258 |
Q |
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| T |
14246264 |
tcaccttgaatacgacaattacgatgtttgccccatttatgtttgtgcatcagtgtcgttcttgttgcatatttctcctagcaaagagcacgtaatgtca |
14246363 |
T |
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| Q |
259 |
tgtttggttatgtaggttgattttatttctcgcat-ccgaagtttgttgagttgtaaatttaccaaaactctaattagtagaagttcgtcaaatagttgc |
357 |
Q |
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| T |
14246364 |
tgtttggttatgtgagttgattgtatttttcgtgtgccaatgtccgctgagctgtaaattctccaaaactctaattaatagaagtagatcaaatagttgc |
14246463 |
T |
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