View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12913_low_37 (Length: 306)
Name: NF12913_low_37
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12913_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 13 - 290
Target Start/End: Complemental strand, 9222928 - 9222653
Alignment:
| Q |
13 |
aatatttttgcattctcgttagtgacataaattacggtggcaacaataatttacctataaaagtttgtgttttagcacataaagtaattgtgtattggct |
112 |
Q |
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| T |
9222928 |
aatatttttgcattctggttagtgacataaattacggtggcaacaataatttacctataaaagtttgtgttttagcacataaagtaattttgtattggct |
9222829 |
T |
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| Q |
113 |
aaatttttcaaatatccaaaataatagagacaccgtcataattctatatggtctaaatttttatctatctcatcatatgagtttaaactttaaattgata |
212 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9222828 |
aaatttttcaaatatccaaaataataga--caccgtcataattctatatggtctaaatttttatctatctcatcgtatgagtttaaactttaaattgata |
9222731 |
T |
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| Q |
213 |
taaaagacgtggttggaaggaaagaatacactaaagtggtcaggtttctcaaccgagattagtcatccctaatatgtg |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| |
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| T |
9222730 |
taaaagacgtggttggaaggaaagaatacactaaagtggtctggtttctcgaccgagattagtcatccgtaatatgtg |
9222653 |
T |
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