View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12913_low_47 (Length: 250)
Name: NF12913_low_47
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12913_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 24732490 - 24732353
Alignment:
| Q |
5 |
aattcaatattctttaatcaccctctccatatactcctattatatgtgcaattgatgtttacccaaattaagctttcggggataaagttga--aaaatga |
102 |
Q |
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| T |
24732490 |
aattcaatattctttaatcaccctctccatatactcctattatatgtgcaattggtgtttacccaaattaagctttcggggataaagttgaagaaaaaaa |
24732391 |
T |
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| Q |
103 |
atagagtgcattttacttgttcatgttaggtcagtcat |
140 |
Q |
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| T |
24732390 |
atagagtgcattttacttgttcatgttaggtcagtcat |
24732353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 24714891 - 24714799
Alignment:
| Q |
45 |
tatatgtgcaattgatgtttacccaaattaagctttcggggataaagttgaaaaatgaatagagtgcattttacttgttcatgttaggtcagt |
137 |
Q |
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| T |
24714891 |
tatatgtataattgttgttcatcctaattaagctttaggggctaaagttgaaaaaggaatacagggtattttccttgttcatgtcaggtcagt |
24714799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 24646520 - 24646452
Alignment:
| Q |
138 |
catgtattgcaattatattttcctatccttattgattgagccgcattctgtttatgtttcaatagttta |
206 |
Q |
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| T |
24646520 |
catgtattgcaattctgttttgttttccttattaattgaccagaattctgtttatgtttcaacagttta |
24646452 |
T |
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