View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12913_low_5 (Length: 620)
Name: NF12913_low_5
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12913_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 522; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 36 - 605
Target Start/End: Original strand, 8003982 - 8004551
Alignment:
| Q |
36 |
gaaacttgaatttgttgtgattgatctatgtttgtctctttaatgtatacattttacttcaaacaaaatattaattgaattcacgatccattactgttct |
135 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8003982 |
gaaacttgaatttgttgtgattgatctatgtctgtctctttaatgtatacattttacttcaaacaaaatattaattgaattcacgattcattactgttct |
8004081 |
T |
|
| Q |
136 |
atttgtgatgatgttgtagcaagatttttagaactatatcactcagctttgttgcgtgtttgattttgctactttagacatctattcattttaaactaaa |
235 |
Q |
| |
|
||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||| |
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|
| T |
8004082 |
atttgtgatgatgttgtggcaagacttttggaactatatcactcagctttgttgcgtgtttgtttttcctgctttagacatctattcattttaaactaaa |
8004181 |
T |
|
| Q |
236 |
tagcatttatagttttctaatcagttgctattgttctacaacaacagcctgcagacatctatctgatagatgagccaagtgcatatcttgattcggaaca |
335 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
8004182 |
tagtatttatagttttctaatcagttgctattgttctacaacaacagcctgcagacatctatctgatagatgagccaagtgcatatcttgattcagaaca |
8004281 |
T |
|
| Q |
336 |
gcgtattgttgctgcaaaagtcattaagaggtttattcttcatgcaaagaaaacagcctttatcgttgagcatgatttcatcatggcaacttatcttgct |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8004282 |
gcgtattgttgctgcaaaagtcattaagaggtttattcttcatgcaaagaaaacagcctttatcgttgagcatgatttcatcatggcaacttatcttgct |
8004381 |
T |
|
| Q |
436 |
gacaaagttatcgtttatgagggtcaaccttcaattaattgtactgcaaactgtccacaatcattgcttactgggatgaatcttttcttatctgtaagtg |
535 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
8004382 |
gacaaagttatcgtttatgagggtcaaccttcaattaattgtactgcaaactgtccacaatcattgcttaccgggatgaaccttttcttatctgtaagtg |
8004481 |
T |
|
| Q |
536 |
tcattgtttttcaatggtttcattaattcgttcctttttaaaaattcagggtatcacacacgttaaaatt |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8004482 |
tcattgtttttcaatggtttcattaattcgttcctttttaaaaattcagggtatcacacacgttaaaatt |
8004551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 37 - 605
Target Start/End: Complemental strand, 7901123 - 7900554
Alignment:
| Q |
37 |
aaacttgaatttgttgtgattgatctatgtttgtctctttaatgtatacattttacttcaaacaaaatattaattgaattcacgatccattactgttcta |
136 |
Q |
| |
|
||||||| |||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
7901123 |
aaacttggatttgttgtgattgatctatttatatctctttaatgtatacattttacttcaaacaaaatattaattgaattcacgattcattactgttcta |
7901024 |
T |
|
| Q |
137 |
tttgtgatgatgttgtagcaagatttttagaactatatcactcagctttgttgcgtgtttgattttgctactttagacatctattcattttaaactaaat |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7901023 |
tttgtgatgatgttgtagcaagatttttagaactatatcactcagctttgttgtgtgtttgattttgctactttagacatctattcattttaaactaaat |
7900924 |
T |
|
| Q |
237 |
agcatttatagttttctaatcagttgctattgttctacaacaacagcctgcagacatctatctgatagatgagccaagtgcatatcttgattcggaacag |
336 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
7900923 |
agtatttatagttttttaatcagttgctattgttctacaacaacagcctgcagacatctatctgatagatgagccaagtgcatatcttgattccgaacag |
7900824 |
T |
|
| Q |
337 |
cgtattgttgctgcaaaagtcattaagaggtttattcttcatgcaaagaaaacagcctttatcgttgagcatgatttcatcatggcaacttatcttgctg |
436 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
7900823 |
cgtattgtagttgcaaaagtcattaagaggtttattcttcatgcaaagaaaacagcctttatcgttgagcatgatttcatcatggcaaattatcttgctg |
7900724 |
T |
|
| Q |
437 |
acaaagttatcgtttatgagggtcaaccttcaa-ttaattgtactgcaaactgtccacaatcattgcttactgggatgaatcttttcttatctgtaagtg |
535 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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|
| T |
7900723 |
acaaagttatcgttcttgagggtcaaccttcaatttaattttactgcaaactgtccacaatcactgcttactgggatgaaccttttcttatctgtaagtg |
7900624 |
T |
|
| Q |
536 |
tcattgtttttcaatggtttcattaattcgttcctttttaaaaattcagggtatcacacacgttaaaatt |
605 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| || ||||||||| |
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|
| T |
7900623 |
tcattgtttttcaatggtttcattaattcgtccctttttaaaaatttagggtatcatgcatgttaaaatt |
7900554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 249 - 605
Target Start/End: Original strand, 51518515 - 51518871
Alignment:
| Q |
249 |
tttctaatcagttgctattgttctacaacaacagcctgcagacatctatctgatagatgagccaagtgcatatcttgattcggaacagcgtattgttgct |
348 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
51518515 |
tttctaatcagttgctattgtcctacaacaacagcctgcagacatctatctgatagatgagccaagtgcatatcttgattccgaacagcgtattgttgct |
51518614 |
T |
|
| Q |
349 |
gcaaaagtcattaagaggtttattcttcatgcaaagaaaacagcctttatcgttgagcatgatttcatcatggcaacttatcttgctgacaaagttatcg |
448 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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|
| T |
51518615 |
gcaaaagtcatcaagaggtttattcttcatgcaaagaaaacagcctttatcgttgagcatgatttcatcatggcaacttatcttgctgacagagttattg |
51518714 |
T |
|
| Q |
449 |
tttatgagggtcaaccttcaattaattgtactgcaaactgtccacaatcattgcttactgggatgaatcttttcttatctgtaagtgtcattgtttttca |
548 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||| |||||||||| |
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|
| T |
51518715 |
tttatgagggtcaaccttcaattgactgtactgcaaattgtccacaatcattgctgaccgggatgaaccttttcttatctgtaagtgtcgttgtttttca |
51518814 |
T |
|
| Q |
549 |
atggtttcattaattcgttcctttttaaaaattcagggtatcacacacgttaaaatt |
605 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||| |||||||||| | ||||||||| |
|
|
| T |
51518815 |
atggtttcattaattcattccgttttaaaaatttagggtatcacgaaagttaaaatt |
51518871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 7904579 - 7904498
Alignment:
| Q |
36 |
gaaacttgaatttgttgtgattgatctatgtttgtctctttaatgtatacattttacttcaaacaaaatattaattgaattc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7904579 |
gaaacttgaatttgttgtgattgatctatgtctgtctctttaatgtatacattttacttcaaacaaaatattaattgaattc |
7904498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 7902954 - 7902873
Alignment:
| Q |
37 |
aaacttgaatttgttgtgattgatctatgtttgtctctttaatgta-tacattttacttcaaacaaaatattaattgaattc |
117 |
Q |
| |
|
||||||| |||||||||||||||||||| | | ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7902954 |
aaacttggatttgttgtgattgatctatttatatctctttaatgtaatacattttacttcaaacaaaatattaattgaattc |
7902873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 36 - 136
Target Start/End: Original strand, 51518346 - 51518446
Alignment:
| Q |
36 |
gaaacttgaatttgttgtgattgatctatgtttgtctctttaatgtatacattttacttcaaacaaaatattaattgaattcacgatccattactgttct |
135 |
Q |
| |
|
|||||||| |||||||||||||| | ||| | | ||| || ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
51518346 |
gaaacttggatttgttgtgattgttatatttctatctgttaaatgtatacattttatttcaaacaaaatattaattgaattcacattccattactgttct |
51518445 |
T |
|
| Q |
136 |
a |
136 |
Q |
| |
|
| |
|
|
| T |
51518446 |
a |
51518446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 133 - 556
Target Start/End: Complemental strand, 1300778 - 1300350
Alignment:
| Q |
133 |
tctatttgtgatgatgttgtagcaagatttttagaactatatcactcagctttgttgcgtgtttgattttgctactttagacat------ctattcattt |
226 |
Q |
| |
|
|||||||||| ||| || | |||||||||||||||||||||| || ||||||||| || |||| ||||||||||| ||| | ||||| |||| |
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|
| T |
1300778 |
tctatttgtgctgacgtcatggcaagatttttagaactatatctcttggctttgttgtgtctttg-ttttgctacttgagatgtgcactcctatttattt |
1300680 |
T |
|
| Q |
227 |
taaactaaatagcatttatagttttctaatcagttgctattgttctacaacaacagcctgcagacatctatctgatagatgagccaagtgcatatcttga |
326 |
Q |
| |
|
|||| |||||| ||||| ||||||||||||| ||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
1300679 |
caaacgaaatagtatttacagttttctaatcaattgctatcgtcctaccacaacagcctgcagacatttatctgatagatgagccaagtgcatatcttga |
1300580 |
T |
|
| Q |
327 |
ttcggaacagcgtattgttgctgcaaaagtcattaagaggtttattcttcatgcaaagaaaacagcctttatcgttgagcatgatttcatcatggcaact |
426 |
Q |
| |
|
||| |||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
1300579 |
ttccgaacagcgtattattgctgcaaaagttatcaagaggtttattcttcatgcaaagaaaacagcctttgtggttgagcatgatttcatcatggcaact |
1300480 |
T |
|
| Q |
427 |
tatcttgctgacaaagttatcgtttatgagggtcaaccttcaattaattgtactgcaaactgtccacaatcattgcttactgggatgaatcttttcttat |
526 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||||| | ||||||||||| | |||||||||| |||| ||||||||||| |||||||||| |
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|
| T |
1300479 |
tatcttgctgacagagttattgtttatgagggtcaaccttcaattgactgtactgcaaattctccacaatcactgctgactgggatgaaccttttcttat |
1300380 |
T |
|
| Q |
527 |
ctgtaagtgtcattgtttttcaatggtttc |
556 |
Q |
| |
|
| |||||||||||||||||||||||||||| |
|
|
| T |
1300379 |
cagtaagtgtcattgtttttcaatggtttc |
1300350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 1300855 - 1300798
Alignment:
| Q |
79 |
tgtatacattttacttcaaacaaaatattaattgaattcacgatccattactgttcta |
136 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||| |||||||||| |||||| |
|
|
| T |
1300855 |
tgtatacattttatttcaaaataaatattaattgaattcctgatccattacggttcta |
1300798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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