View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12913_low_50 (Length: 247)
Name: NF12913_low_50
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12913_low_50 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: scaffold0219 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 11169 - 10930
Alignment:
| Q |
8 |
catcatcaacacttcatcaaatattctctaggatatgtcaatgtcgacaagaatgccagcgtagtacctaccctgcttgatatttcaaacaatgttcttg |
107 |
Q |
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| T |
11169 |
catcaccaacacttcatcaaatattctctaggataggtcaatgtcgacaagaatgccagcgtagtacctaccccgcttgatatttcaaacaatgttcttg |
11070 |
T |
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| Q |
108 |
gcagccaatattcttgggggaggtccatgattctgaacattggattgcctttgtgtgtaagggttgaaatcatgttcccactttgagaggcacaagaaat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11069 |
gcagccaatattcttgggggaggtccatgattctgaacattggattgcctttgtgtgtaagggttgaaatcatgttcccactttgagaggcataagaaat |
10970 |
T |
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| Q |
208 |
ctggatgaagagagatcatcaacctccattggccaaaatc |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
10969 |
ctggatgaagagagatcatcaacctccattggccaaaatc |
10930 |
T |
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