View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12913_low_51 (Length: 243)
Name: NF12913_low_51
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12913_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 54919113 - 54919225
Alignment:
| Q |
93 |
aatagactgctaccatttttcaatgttaattcattaattacacatgtctatgtaagcatgcatacattacaaaacctccataaaccacttttatgtgcat |
192 |
Q |
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| T |
54919113 |
aatagactgctaccatttttcaatgttaattcattaattacacatgtctatgtaagcatgcatacgttacaaaacctccataaaccacttttatgtgcat |
54919212 |
T |
|
| Q |
193 |
tcgatctttaatg |
205 |
Q |
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||||||||||||| |
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| T |
54919213 |
tcgatctttaatg |
54919225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 216
Target Start/End: Original strand, 54922025 - 54922147
Alignment:
| Q |
95 |
tagactgctaccatttttcaatgttaattcattaattacacatgtctatgtaagcatgcatacattacaaaacctcca-taaaccacttttatgtgcatt |
193 |
Q |
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|||||| ||| |||||| | ||| ||||||||||| ||||||||||||| |||||||||| |||||||||||| |||| ||| ||||| | || |||| |
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| T |
54922025 |
tagactactatcattttccgatgctaattcattaactacacatgtctatctaagcatgcagacattacaaaacgtccacaaaatcacttctctgcacatt |
54922124 |
T |
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| Q |
194 |
cgatctttaatgccattttccaa |
216 |
Q |
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| ||| |||||| |||||||||| |
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| T |
54922125 |
caatccttaatgtcattttccaa |
54922147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 54919049 - 54919091
Alignment:
| Q |
1 |
taaaaagtcatttt-ttacttataaatgtgaacaaagagaata |
42 |
Q |
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| T |
54919049 |
taaaaagtcatttttttacttataaatgtgaacgaagagaata |
54919091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 227
Target Start/End: Original strand, 54921451 - 54921481
Alignment:
| Q |
197 |
tctttaatgccattttccaagacttaatcct |
227 |
Q |
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| T |
54921451 |
tctttaatgccattttccaagacttaatcct |
54921481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37247676 - 37247717
Alignment:
| Q |
1 |
taaaaagtcattttttacttataaatgtgaacaaagagaata |
42 |
Q |
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|||||||| ||||||||||||||||||||| |||| |||||| |
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| T |
37247676 |
taaaaagttattttttacttataaatgtgaccaaaaagaata |
37247717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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